Analysis of interatomic Contacts of Structural Units in PDB entry:
5DEZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DEZ entry

There are 2 chains in PDB entry 5DEZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 18PHE 545
B
 ILE 18PHE 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5DEZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 46Right-handed alpha
Helix 2
AA2
A
83 86Right-handed 310
Helix 3
AA3
A
157 160Right-handed 310
Helix 4
AA4
A
165 169Right-handed 310
Helix 5
AA5
A
170 174Right-handed 310
Helix 6
AA6
A
191 197Right-handed 310
Helix 7
AA7
A
199 208Right-handed alpha
Helix 8
AA8
A
220 225Right-handed alpha
Helix 9
AA9
A
240 253Right-handed alpha
Helix 10
AB1
A
268 274Right-handed 310
Helix 11
AB2
A
276 294Right-handed alpha
Helix 12
AB3
A
318 345Right-handed alpha
Helix 13
AB4
A
357 362Right-handed alpha
Helix 14
AB5
A
365 370Right-handed alpha
Helix 15
AB6
A
410 421Right-handed alpha
Helix 16
AB7
A
424 426Right-handed 310
Helix 17
AB8
A
449 453Right-handed 310
Helix 18
AB9
A
470 476Right-handed alpha
Helix 19
AC1
A
477 480Right-handed 310
Helix 20
AC2
A
506 520Right-handed alpha
Helix 21
AC3
A
529 533Right-handed 310
Helix 22
AC4
A
535 543Right-handed alpha
Helix 23
AC5
B
42 46Right-handed alpha
Helix 24
AC6
B
157 160Right-handed 310
Helix 25
AC7
B
165 169Right-handed 310
Helix 26
AC8
B
170 174Right-handed 310
Helix 27
AC9
B
191 197Right-handed 310
Helix 28
AD1
B
199 209Right-handed alpha
Helix 29
AD2
B
220 226Right-handed alpha
Helix 30
AD3
B
240 253Right-handed alpha
Helix 31
AD4
B
268 273Right-handed alpha
Helix 32
AD5
B
276 294Right-handed alpha
Helix 33
AD6
B
318 345Right-handed alpha
Helix 34
AD7
B
357 362Right-handed alpha
Helix 35
AD8
B
365 370Right-handed alpha
Helix 36
AD9
B
410 422Right-handed alpha
Helix 37
AE1
B
424 426Right-handed 310
Helix 38
AE2
B
449 453Right-handed 310
Helix 39
AE3
B
470 476Right-handed alpha
Helix 40
AE4
B
477 480Right-handed 310
Helix 41
AE5
B
506 520Right-handed alpha
Helix 42
AE6
B
529 533Right-handed 310
Helix 43
AE7
B
535 542Right-handed alpha
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There are 12 sheets in PDB entry 5DEZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
88 93anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
117 122parallel
Strand 3
A
97 106anti-parallel
Strand 4
A
69 74anti-parallel
Strand 5
A
77 82anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
117 122parallel
Strand 3
A
97 106anti-parallel
Strand 4
A
111 113anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
47 49anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 155first strand
Strand 2
A
176 182parallel
Strand 3
A
257 263parallel
Strand 4
A
299 303parallel
Strand 5
A
349 355parallel
Strand 6
A
375 379parallel
Strand 7
A
428 433parallel
Strand 8
A
524 528parallel
Strand 9
A
149 155parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 469first strand
Strand 2
A
435 439anti-parallel
Strand 3
A
500 504anti-parallel
Strand 4
A
490 495anti-parallel
Strand 5
A
481 485anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
53 62anti-parallel
Strand 3
B
88 93anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
117 122parallel
Strand 3
B
97 107anti-parallel
Strand 4
B
69 74anti-parallel
Strand 5
B
77 83anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
117 122parallel
Strand 3
B
97 107anti-parallel
Strand 4
B
110 113anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
47 49anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 155first strand
Strand 2
B
176 182parallel
Strand 3
B
257 264parallel
Strand 4
B
299 304parallel
Strand 5
B
349 355parallel
Strand 6
B
375 379parallel
Strand 7
B
428 433parallel
Strand 8
B
524 528parallel
Strand 9
B
149 155parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 469first strand
Strand 2
B
435 439anti-parallel
Strand 3
B
500 504anti-parallel
Strand 4
B
490 495anti-parallel
Strand 5
B
481 485anti-parallel
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