Analysis of interatomic Contacts of Structural Units in PDB entry:
5DF7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DF7 entry

There are 2 chains in PDB entry 5DF7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 50	THR 564
B	ALA 57	ALA 563

There are 48 helices in PDB entry 5DF7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	90	Right-handed alpha
Helix 2	AA2	A	91	94	Right-handed 310
Helix 3	AA3	A	95	103	Right-handed alpha
Helix 4	AA4	A	106	117	Right-handed alpha
Helix 5	AA5	A	130	140	Right-handed alpha
Helix 6	AA6	A	157	160	Right-handed 310
Helix 7	AA7	A	161	166	Right-handed alpha
Helix 8	AA8	A	176	182	Right-handed alpha
Helix 9	AA9	A	182	187	Right-handed alpha
Helix 10	AB1	A	224	243	Right-handed alpha
Helix 11	AB2	A	277	282	Right-handed 310
Helix 12	AB3	A	283	288	Right-handed alpha
Helix 13	AB4	A	292	295	Right-handed 310
Helix 14	AB5	A	296	307	Right-handed alpha
Helix 15	AB6	A	342	349	Right-handed alpha
Helix 16	AB7	A	350	362	Right-handed alpha
Helix 17	AB8	A	362	373	Right-handed alpha
Helix 18	AB9	A	398	407	Right-handed alpha
Helix 19	AC1	A	414	427	Right-handed alpha
Helix 20	AC2	A	450	467	Right-handed alpha
Helix 21	AC3	A	471	475	Right-handed 310
Helix 22	AC4	A	533	538	Right-handed alpha
Helix 23	AC5	A	538	553	Right-handed alpha
Helix 24	AC6	A	559	563	Right-handed 310
Helix 25	AC7	B	85	90	Right-handed alpha
Helix 26	AC8	B	91	94	Right-handed 310
Helix 27	AC9	B	95	103	Right-handed alpha
Helix 28	AD1	B	106	117	Right-handed alpha
Helix 29	AD2	B	130	139	Right-handed alpha
Helix 30	AD3	B	157	160	Right-handed 310
Helix 31	AD4	B	161	166	Right-handed alpha
Helix 32	AD5	B	176	182	Right-handed alpha
Helix 33	AD6	B	182	187	Right-handed alpha
Helix 34	AD7	B	224	243	Right-handed alpha
Helix 35	AD8	B	277	282	Right-handed 310
Helix 36	AD9	B	283	288	Right-handed alpha
Helix 37	AE1	B	292	295	Right-handed 310
Helix 38	AE2	B	296	307	Right-handed alpha
Helix 39	AE3	B	342	348	Right-handed alpha
Helix 40	AE4	B	350	362	Right-handed alpha
Helix 41	AE5	B	362	374	Right-handed alpha
Helix 42	AE6	B	398	407	Right-handed alpha
Helix 43	AE7	B	414	427	Right-handed alpha
Helix 44	AE8	B	450	467	Right-handed alpha
Helix 45	AE9	B	471	475	Right-handed 310
Helix 46	AF1	B	533	538	Right-handed alpha
Helix 47	AF2	B	538	553	Right-handed alpha
Helix 48	AF3	B	559	563	Right-handed 310

There are 13 sheets in PDB entry 5DF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	58	first strand
Strand 2	A	191	197	anti-parallel
Strand 3	A	203	211	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	129	first strand
Strand 2	A	72	84	anti-parallel
Strand 3	A	145	154	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	129	first strand
Strand 2	A	72	84	anti-parallel
Strand 3	A	65	66	anti-parallel
Strand 4	A	219	220	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	265	first strand
Strand 2	A	246	253	anti-parallel
Strand 3	A	518	525	anti-parallel
Strand 4	A	498	511	anti-parallel
Strand 5	A	482	491	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	317	first strand
Strand 2	A	339	341	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	A	328	331	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	431	first strand
Strand 2	A	446	447	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	129	first strand
Strand 2	B	72	84	anti-parallel
Strand 3	B	145	154	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	129	first strand
Strand 2	B	72	84	anti-parallel
Strand 3	B	65	66	anti-parallel
Strand 4	B	219	220	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	265	first strand
Strand 2	B	246	253	anti-parallel
Strand 3	B	518	525	anti-parallel
Strand 4	B	498	511	anti-parallel
Strand 5	B	482	491	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	B	339	341	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	325	first strand
Strand 2	B	328	331	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	431	first strand
Strand 2	B	446	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DF7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DF7