Analysis of interatomic Contacts of Structural Units in PDB entry:
5DFA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DFA entry

There are 3 chains in PDB entry 5DFA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 3	ARG 687
B	LYS 4	ARG 687
C	PRO 3	ARG 687

There are 74 helices in PDB entry 5DFA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	27	Right-handed 310
Helix 2	AA2	A	30	44	Right-handed alpha
Helix 3	AA3	A	55	60	Right-handed alpha
Helix 4	AA4	A	68	81	Right-handed alpha
Helix 5	AA5	A	95	102	Right-handed alpha
Helix 6	AA6	A	103	106	Right-handed 310
Helix 7	AA7	A	127	146	Right-handed alpha
Helix 8	AA8	A	166	181	Right-handed alpha
Helix 9	AA9	A	184	193	Right-handed alpha
Helix 10	AB1	A	195	199	Right-handed 310
Helix 11	AB2	A	203	207	Right-handed 310
Helix 12	AB3	A	218	241	Right-handed alpha
Helix 13	AB4	A	241	248	Right-handed alpha
Helix 14	AB5	A	271	276	Right-handed alpha
Helix 15	AB6	A	277	279	Right-handed 310
Helix 16	AB7	A	296	313	Right-handed alpha
Helix 17	AB8	A	341	353	Right-handed alpha
Helix 18	AB9	A	386	400	Right-handed alpha
Helix 19	AC1	A	401	406	Right-handed 310
Helix 20	AC2	A	419	429	Right-handed alpha
Helix 21	AC3	A	438	453	Right-handed alpha
Helix 22	AC4	A	481	494	Right-handed alpha
Helix 23	AC5	A	519	527	Right-handed alpha
Helix 24	AC6	A	600	615	Right-handed alpha
Helix 25	AC7	B	23	27	Right-handed 310
Helix 26	AC8	B	30	44	Right-handed alpha
Helix 27	AC9	B	55	60	Right-handed alpha
Helix 28	AD1	B	68	81	Right-handed alpha
Helix 29	AD2	B	90	93	Right-handed 310
Helix 30	AD3	B	95	102	Right-handed alpha
Helix 31	AD4	B	103	106	Right-handed 310
Helix 32	AD5	B	127	146	Right-handed alpha
Helix 33	AD6	B	166	181	Right-handed alpha
Helix 34	AD7	B	184	193	Right-handed alpha
Helix 35	AD8	B	195	199	Right-handed 310
Helix 36	AD9	B	203	207	Right-handed 310
Helix 37	AE1	B	218	241	Right-handed alpha
Helix 38	AE2	B	241	248	Right-handed alpha
Helix 39	AE3	B	271	276	Right-handed alpha
Helix 40	AE4	B	277	279	Right-handed 310
Helix 41	AE5	B	296	313	Right-handed alpha
Helix 42	AE6	B	341	353	Right-handed alpha
Helix 43	AE7	B	386	401	Right-handed alpha
Helix 44	AE8	B	402	406	Right-handed 310
Helix 45	AE9	B	419	429	Right-handed alpha
Helix 46	AF1	B	438	453	Right-handed alpha
Helix 47	AF2	B	481	494	Right-handed alpha
Helix 48	AF3	B	519	527	Right-handed alpha
Helix 49	AF4	B	600	615	Right-handed alpha
Helix 50	AF5	C	23	27	Right-handed 310
Helix 51	AF6	C	30	44	Right-handed alpha
Helix 52	AF7	C	55	60	Right-handed alpha
Helix 53	AF8	C	68	81	Right-handed alpha
Helix 54	AF9	C	90	93	Right-handed 310
Helix 55	AG1	C	95	102	Right-handed alpha
Helix 56	AG2	C	103	106	Right-handed 310
Helix 57	AG3	C	127	146	Right-handed alpha
Helix 58	AG4	C	166	181	Right-handed alpha
Helix 59	AG5	C	184	193	Right-handed alpha
Helix 60	AG6	C	195	199	Right-handed 310
Helix 61	AG7	C	203	207	Right-handed 310
Helix 62	AG8	C	218	241	Right-handed alpha
Helix 63	AG9	C	241	248	Right-handed alpha
Helix 64	AH1	C	271	276	Right-handed alpha
Helix 65	AH2	C	277	279	Right-handed 310
Helix 66	AH3	C	296	313	Right-handed alpha
Helix 67	AH4	C	341	353	Right-handed alpha
Helix 68	AH5	C	386	400	Right-handed alpha
Helix 69	AH6	C	401	406	Right-handed 310
Helix 70	AH7	C	419	429	Right-handed alpha
Helix 71	AH8	C	438	453	Right-handed alpha
Helix 72	AH9	C	481	494	Right-handed alpha
Helix 73	AI1	C	519	527	Right-handed alpha
Helix 74	AI2	C	600	616	Right-handed alpha

There are 15 sheets in PDB entry 5DFA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	254	first strand
Strand 2	A	151	155	parallel
Strand 3	A	84	88	parallel
Strand 4	A	48	51	parallel
Strand 5	A	17	22	parallel
Strand 6	A	355	360	parallel
Strand 7	A	319	324	parallel
Strand 8	A	283	286	parallel
Strand 9	A	256	258	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	460	first strand
Strand 2	A	414	417	parallel
Strand 3	A	471	474	parallel
Strand 4	A	497	501	parallel
Strand 5	A	590	595	parallel
Strand 6	A	580	587	anti-parallel
Strand 7	A	566	571	anti-parallel
Strand 8	A	542	546	anti-parallel
Strand 9	A	550	554	anti-parallel
Strand 10	A	598	599	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	535	first strand
Strand 2	A	556	562	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	624	first strand
Strand 2	A	652	662	anti-parallel
Strand 3	A	680	686	anti-parallel
Strand 4	A	639	646	anti-parallel
Strand 5	A	629	635	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	624	first strand
Strand 2	A	652	662	anti-parallel
Strand 3	A	668	675	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	151	155	parallel
Strand 3	B	84	88	parallel
Strand 4	B	48	51	parallel
Strand 5	B	17	22	parallel
Strand 6	B	355	360	parallel
Strand 7	B	319	323	parallel
Strand 8	B	283	285	parallel
Strand 9	B	256	257	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	460	first strand
Strand 2	B	414	417	parallel
Strand 3	B	471	474	parallel
Strand 4	B	497	501	parallel
Strand 5	B	590	595	parallel
Strand 6	B	580	587	anti-parallel
Strand 7	B	566	571	anti-parallel
Strand 8	B	542	546	anti-parallel
Strand 9	B	549	554	anti-parallel
Strand 10	B	598	599	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	535	first strand
Strand 2	B	556	562	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	624	first strand
Strand 2	B	652	662	anti-parallel
Strand 3	B	680	686	anti-parallel
Strand 4	B	639	646	anti-parallel
Strand 5	B	629	635	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	624	first strand
Strand 2	B	652	662	anti-parallel
Strand 3	B	668	675	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	254	first strand
Strand 2	C	151	155	parallel
Strand 3	C	84	88	parallel
Strand 4	C	48	51	parallel
Strand 5	C	17	21	parallel
Strand 6	C	355	360	parallel
Strand 7	C	319	324	parallel
Strand 8	C	283	286	parallel
Strand 9	C	256	257	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	460	first strand
Strand 2	C	414	417	parallel
Strand 3	C	471	474	parallel
Strand 4	C	497	501	parallel
Strand 5	C	590	595	parallel
Strand 6	C	580	587	anti-parallel
Strand 7	C	566	571	anti-parallel
Strand 8	C	542	546	anti-parallel
Strand 9	C	550	554	anti-parallel
Strand 10	C	598	599	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	535	first strand
Strand 2	C	556	562	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	624	first strand
Strand 2	C	652	662	anti-parallel
Strand 3	C	680	686	anti-parallel
Strand 4	C	639	646	anti-parallel
Strand 5	C	629	635	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	624	first strand
Strand 2	C	652	662	anti-parallel
Strand 3	C	668	675	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DFA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DFA