Analysis of interatomic Contacts of Structural Units in PDB entry:
5DFM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DFM entry

There are 2 chains in PDB entry 5DFM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	ALA 527
B	LYS 1	LEU 522

There are 45 helices in PDB entry 5DFM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	53	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	82	87	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	128	130	Right-handed 310
Helix 7	AA7	A	131	140	Right-handed alpha
Helix 8	AA8	A	153	164	Right-handed alpha
Helix 9	AA9	A	185	201	Right-handed alpha
Helix 10	AB1	A	209	219	Right-handed alpha
Helix 11	AB2	A	228	230	Right-handed 310
Helix 12	AB3	A	231	239	Right-handed alpha
Helix 13	AB4	A	272	283	Right-handed alpha
Helix 14	AB5	A	286	297	Right-handed alpha
Helix 15	AB6	A	304	312	Right-handed alpha
Helix 16	AB7	A	314	327	Right-handed alpha
Helix 17	AB8	A	335	352	Right-handed alpha
Helix 18	AB9	A	356	371	Right-handed alpha
Helix 19	AC1	A	385	394	Right-handed alpha
Helix 20	AC2	A	418	428	Right-handed alpha
Helix 21	AC3	A	436	449	Right-handed alpha
Helix 22	AC4	A	503	505	Right-handed 310
Helix 23	AC5	B	16	32	Right-handed alpha
Helix 24	AC6	B	42	53	Right-handed alpha
Helix 25	AC7	B	66	73	Right-handed alpha
Helix 26	AC8	B	82	87	Right-handed alpha
Helix 27	AC9	B	90	97	Right-handed alpha
Helix 28	AD1	B	128	130	Right-handed 310
Helix 29	AD2	B	131	141	Right-handed alpha
Helix 30	AD3	B	153	156	Right-handed 310
Helix 31	AD4	B	157	164	Right-handed alpha
Helix 32	AD5	B	185	199	Right-handed alpha
Helix 33	AD6	B	209	219	Right-handed alpha
Helix 34	AD7	B	228	230	Right-handed 310
Helix 35	AD8	B	231	239	Right-handed alpha
Helix 36	AD9	B	272	283	Right-handed alpha
Helix 37	AE1	B	286	297	Right-handed alpha
Helix 38	AE2	B	304	312	Right-handed alpha
Helix 39	AE3	B	314	327	Right-handed alpha
Helix 40	AE4	B	335	352	Right-handed alpha
Helix 41	AE5	B	356	371	Right-handed alpha
Helix 42	AE6	B	385	394	Right-handed alpha
Helix 43	AE7	B	418	428	Right-handed alpha
Helix 44	AE8	B	435	449	Right-handed alpha
Helix 45	AE9	B	503	505	Right-handed 310

There are 16 sheets in PDB entry 5DFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	6	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	6	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	227	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	242	245	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	175	182	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	253	254	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	380	382	anti-parallel
Strand 3	A	405	417	parallel
Strand 4	A	464	469	anti-parallel
Strand 5	A	472	477	anti-parallel
Strand 6	A	507	515	parallel
Strand 7	A	482	483	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	380	382	anti-parallel
Strand 3	A	405	417	parallel
Strand 4	A	492	501	anti-parallel
Strand 5	A	507	515	anti-parallel
Strand 6	A	482	483	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	6	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	106	111	anti-parallel
Strand 6	B	301	302	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	6	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	328	329	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	148	first strand
Strand 2	B	222	227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	242	245	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	172	first strand
Strand 2	B	175	182	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	253	254	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	380	382	anti-parallel
Strand 3	B	405	416	parallel
Strand 4	B	464	469	anti-parallel
Strand 5	B	472	477	anti-parallel
Strand 6	B	507	515	parallel
Strand 7	B	482	483	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	380	382	anti-parallel
Strand 3	B	405	416	parallel
Strand 4	B	492	501	anti-parallel
Strand 5	B	507	515	anti-parallel
Strand 6	B	482	483	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DFM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DFM