Analysis of interatomic Contacts of Structural Units in PDB entry:
5DFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DFN entry

There are 2 chains in PDB entry 5DFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 18GLN 206
B
 THR 18SER 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5DFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 44Right-handed alpha
Helix 2
AA2
A
73 78Right-handed alpha
Helix 3
AA3
A
79 88Right-handed alpha
Helix 4
AA4
A
94 112Right-handed alpha
Helix 5
AA5
A
130 147Right-handed alpha
Helix 6
AA6
A
148 152Right-handed 310
Helix 7
AA7
A
154 167Right-handed alpha
Helix 8
AA8
A
177 191Right-handed alpha
Helix 9
AA9
B
19 44Right-handed alpha
Helix 10
AB1
B
73 78Right-handed alpha
Helix 11
AB2
B
79 88Right-handed alpha
Helix 12
AB3
B
94 112Right-handed alpha
Helix 13
AB4
B
130 149Right-handed alpha
Helix 14
AB5
B
150 152Right-handed 310
Helix 15
AB6
B
154 167Right-handed alpha
Helix 16
AB7
B
177 191Right-handed alpha
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There are 2 sheets in PDB entry 5DFN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
124 129anti-parallel
Strand 3
A
115 121anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
115 121anti-parallel
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