Analysis of interatomic Contacts of Structural Units in PDB entry:
5DFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DFT entry

There are 10 chains in PDB entry 5DFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 13PRO 101
B
 GLN 13ALA 100
C
 GLN 13PRO 101
D
 GLN 13PRO 101
E
 GLN 13PRO 101
F
 GLN 13ALA 100
G
 GLN 13ALA 100
H
 GLN 13ALA 100
I
 GLN 13ALA 100
J
 GLN 13PRO 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 5DFT

There are 20 sheets in PDB entry 5DFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 19first strand
Strand 2
A
24 28anti-parallel
Strand 3
A
62 65anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
73 81anti-parallel
Strand 4
A
87 96anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 19first strand
Strand 2
B
24 28anti-parallel
Strand 3
B
62 65anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
73 81anti-parallel
Strand 4
B
87 96anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 19first strand
Strand 2
C
23 28anti-parallel
Strand 3
C
62 66anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
37 44anti-parallel
Strand 3
C
73 81anti-parallel
Strand 4
C
87 96anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 19first strand
Strand 2
D
23 28anti-parallel
Strand 3
D
62 66anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 56first strand
Strand 2
D
37 44anti-parallel
Strand 3
D
73 81anti-parallel
Strand 4
D
87 96anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 19first strand
Strand 2
E
23 28anti-parallel
Strand 3
E
62 66anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
52 56first strand
Strand 2
E
37 44anti-parallel
Strand 3
E
73 81anti-parallel
Strand 4
E
87 96anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
14 19first strand
Strand 2
F
23 28anti-parallel
Strand 3
F
62 66anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
52 56first strand
Strand 2
F
37 44anti-parallel
Strand 3
F
73 81anti-parallel
Strand 4
F
87 96anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
14 19first strand
Strand 2
G
23 28anti-parallel
Strand 3
G
62 66anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
52 56first strand
Strand 2
G
37 44anti-parallel
Strand 3
G
73 81anti-parallel
Strand 4
G
87 96anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 19first strand
Strand 2
H
23 28anti-parallel
Strand 3
H
62 66anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
52 56first strand
Strand 2
H
37 44anti-parallel
Strand 3
H
73 81anti-parallel
Strand 4
H
87 96anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
14 19first strand
Strand 2
I
24 28anti-parallel
Strand 3
I
62 65anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
52 56first strand
Strand 2
I
37 44anti-parallel
Strand 3
I
73 81anti-parallel
Strand 4
I
87 96anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
14 19first strand
Strand 2
J
24 28anti-parallel
Strand 3
J
62 65anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
52 56first strand
Strand 2
J
37 44anti-parallel
Strand 3
J
73 81anti-parallel
Strand 4
J
87 96anti-parallel
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