Analysis of interatomic Contacts of Structural Units in PDB entry:
5DFW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DFW entry

There are 2 chains in PDB entry 5DFW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 113HIS 202
H
 VAL 102LYS 810
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5DFW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 135Right-handed alpha
Helix 2
AA2
A
141 155Right-handed alpha
Helix 3
AA3
A
159 164Right-handed 310
Helix 4
AA4
A
165 172Right-handed alpha
Helix 5
AA5
A
180 186Right-handed alpha
Helix 6
AA6
A
189 200Right-handed alpha
Helix 7
AA7
H
153 156Right-handed 310
Helix 8
AA8
H
295 298Right-handed 310
Helix 9
AA9
H
321 325Right-handed 310
Helix 10
AB1
H
725 729Right-handed 310
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There are 4 sheets in PDB entry 5DFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
105 106first strand
Strand 2
H
118 123anti-parallel
Strand 3
H
312 317anti-parallel
Strand 4
H
303 307anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
110 112first strand
Strand 2
H
405 409parallel
Strand 3
H
326 351anti-parallel
Strand 4
H
197 204anti-parallel
Strand 5
H
210 253anti-parallel
Strand 6
H
291 293anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
504 507first strand
Strand 2
H
519 552anti-parallel
Strand 3
H
716 721anti-parallel
Strand 4
H
706 711anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
510 512first strand
Strand 2
H
805 808parallel
Strand 3
H
730 752anti-parallel
Strand 4
H
598 604anti-parallel
Strand 5
H
611 615anti-parallel
Strand 6
H
696 697anti-parallel
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