Analysis of interatomic Contacts of Structural Units in PDB entry:
5DFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DFY entry

There is 1 chain in PDB entry 5DFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 439GLN 596
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5DFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
439 457Right-handed alpha
Helix 2
AA2
A
498 504Right-handed alpha
Helix 3
AA3
A
506 512Right-handed 310
Helix 4
AA4
A
519 523Right-handed 310
Helix 5
AA5
A
526 536Right-handed alpha
Helix 6
AA6
A
568 594Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5DFY.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 479first strand
Strand 2
A
460 466anti-parallel
Strand 3
A
551 560anti-parallel
Strand 4
A
540 548anti-parallel
Strand 5
A
515 517anti-parallel
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