Analysis of interatomic Contacts of Structural Units in PDB entry:
5DG1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DG1 entry

There are 6 chains in PDB entry 5DG1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7GLU 135
B
 GLY 6GLU 135
C
 GLY 6GLU 135
D
 GLU 7GLU 135
H
 GLU 7GLU 135
I
 GLU 7GLU 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 5DG1

There are 11 sheets in PDB entry 5DG1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
44 52anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
119 124anti-parallel
Strand 6
A
9 11anti-parallel
Strand 7
D
8 11anti-parallel
Strand 8
D
119 124anti-parallel
Strand 9
D
34 39anti-parallel
Strand 10
D
44 52anti-parallel
Strand 11
D
57 64anti-parallel
Strand 12
D
67 68anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
44 52anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
119 124anti-parallel
Strand 6
A
9 11anti-parallel
Strand 7
D
8 11anti-parallel
Strand 8
D
119 124anti-parallel
Strand 9
D
34 39anti-parallel
Strand 10
D
44 52anti-parallel
Strand 11
D
57 64anti-parallel
Strand 12
D
72 74anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
95 99anti-parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
20 27anti-parallel
Strand 5
A
126 134anti-parallel
Strand 6
D
126 134anti-parallel
Strand 7
D
20 27anti-parallel
Strand 8
D
84 91anti-parallel
Strand 9
D
95 99anti-parallel
Strand 10
D
105 109anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
126 134anti-parallel
Strand 4
C
126 134anti-parallel
Strand 5
C
20 27anti-parallel
Strand 6
C
83 91anti-parallel
Strand 7
C
95 99anti-parallel
Strand 8
C
105 109anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
34 38anti-parallel
Strand 3
B
121 124anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
62 64anti-parallel
Strand 3
B
67 69anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 15first strand
Strand 2
C
117 124anti-parallel
Strand 3
C
34 41anti-parallel
Strand 4
C
44 52anti-parallel
Strand 5
C
57 64anti-parallel
Strand 6
C
67 68anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 15first strand
Strand 2
C
117 124anti-parallel
Strand 3
C
34 41anti-parallel
Strand 4
C
44 52anti-parallel
Strand 5
C
57 64anti-parallel
Strand 6
C
72 74anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
67 68first strand
Strand 2
H
57 64anti-parallel
Strand 3
H
72 74anti-parallel
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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
67 68first strand
Strand 2
H
57 64anti-parallel
Strand 3
H
44 52anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
119 124anti-parallel
Strand 6
H
9 11anti-parallel
Strand 7
I
9 15anti-parallel
Strand 8
I
117 124anti-parallel
Strand 9
I
34 39anti-parallel
Strand 10
I
47 52anti-parallel
Strand 11
I
57 61anti-parallel
Strand 12
I
72 74anti-parallel
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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
105 109first strand
Strand 2
H
95 99anti-parallel
Strand 3
H
83 91anti-parallel
Strand 4
H
19 27anti-parallel
Strand 5
H
126 134anti-parallel
Strand 6
I
126 134anti-parallel
Strand 7
I
20 27anti-parallel
Strand 8
I
84 91anti-parallel
Strand 9
I
95 99anti-parallel
Strand 10
I
107 109anti-parallel
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