Analysis of interatomic Contacts of Structural Units in PDB entry:
5DG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DG5 entry

There are 2 chains in PDB entry 5DG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1050GLY 1346
B
 THR 1050GLY 1346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5DG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1054 1058Right-handed 310
Helix 2
AA2
A
1059 1068Right-handed alpha
Helix 3
AA3
A
1117 1133Right-handed alpha
Helix 4
AA4
A
1164 1171Right-handed alpha
Helix 5
AA5
A
1177 1198Right-handed alpha
Helix 6
AA6
A
1206 1208Right-handed 310
Helix 7
AA7
A
1246 1250Right-handed 310
Helix 8
AA8
A
1251 1258Right-handed alpha
Helix 9
AA9
A
1261 1278Right-handed alpha
Helix 10
AB1
A
1291 1298Right-handed alpha
Helix 11
AB2
A
1309 1320Right-handed alpha
Helix 12
AB3
A
1323 1327Right-handed 310
Helix 13
AB4
A
1329 1343Right-handed alpha
Helix 14
AB5
B
1054 1058Right-handed 310
Helix 15
AB6
B
1059 1068Right-handed alpha
Helix 16
AB7
B
1117 1133Right-handed alpha
Helix 17
AB8
B
1164 1171Right-handed alpha
Helix 18
AB9
B
1177 1198Right-handed alpha
Helix 19
AC1
B
1206 1208Right-handed 310
Helix 20
AC2
B
1246 1250Right-handed 310
Helix 21
AC3
B
1251 1258Right-handed alpha
Helix 22
AC4
B
1261 1278Right-handed alpha
Helix 23
AC5
B
1291 1298Right-handed alpha
Helix 24
AC6
B
1309 1320Right-handed alpha
Helix 25
AC7
B
1323 1327Right-handed 310
Helix 26
AC8
B
1329 1343Right-handed alpha
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There are 6 sheets in PDB entry 5DG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1076 1086first strand
Strand 2
A
1090 1098anti-parallel
Strand 3
A
1104 1112anti-parallel
Strand 4
A
1154 1158anti-parallel
Strand 5
A
1144 1146anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1210 1212first strand
Strand 2
A
1218 1220anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1225 1226first strand
Strand 2
A
1235 1236anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1076 1086first strand
Strand 2
B
1090 1098anti-parallel
Strand 3
B
1104 1112anti-parallel
Strand 4
B
1154 1158anti-parallel
Strand 5
B
1144 1146anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1210 1212first strand
Strand 2
B
1218 1220anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1225 1226first strand
Strand 2
B
1235 1236anti-parallel
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