Analysis of interatomic Contacts of Structural Units in PDB entry:
5DGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DGG entry

There are 2 chains in PDB entry 5DGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 123VAL 304
B
 ARG 123LYS 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5DGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
127 135Right-handed alpha
Helix 2
AA2
A
152 168Right-handed alpha
Helix 3
AA3
A
210 216Right-handed 310
Helix 4
AA4
A
217 229Right-handed alpha
Helix 5
AA5
A
231 233Right-handed 310
Helix 6
AA6
A
248 250Right-handed 310
Helix 7
AA7
A
251 267Right-handed alpha
Helix 8
AA8
A
270 274Right-handed 310
Helix 9
AA9
A
275 286Right-handed alpha
Helix 10
AB1
A
287 289Right-handed 310
Helix 11
AB2
A
290 304Right-handed alpha
Helix 12
AB3
B
127 135Right-handed alpha
Helix 13
AB4
B
159 168Right-handed alpha
Helix 14
AB5
B
210 215Right-handed alpha
Helix 15
AB6
B
217 228Right-handed alpha
Helix 16
AB7
B
231 235Right-handed 310
Helix 17
AB8
B
248 250Right-handed 310
Helix 18
AB9
B
251 267Right-handed alpha
Helix 19
AC1
B
270 274Right-handed 310
Helix 20
AC2
B
275 286Right-handed alpha
Helix 21
AC3
B
287 289Right-handed 310
Helix 22
AC4
B
290 306Right-handed alpha
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There are 4 sheets in PDB entry 5DGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
174 180parallel
Strand 3
A
148 149parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
174 180parallel
Strand 3
A
185 190anti-parallel
Strand 4
A
201 206anti-parallel
Strand 5
A
235 240parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
174 180parallel
Strand 3
B
148 149parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
174 180parallel
Strand 3
B
185 190anti-parallel
Strand 4
B
202 206anti-parallel
Strand 5
B
236 240parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il