Analysis of interatomic Contacts of Structural Units in PDB entry:
5DGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DGI entry

There is 1 chain in PDB entry 5DGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 42SER 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5DGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 56Right-handed alpha
Helix 2
AA2
A
57 68Right-handed alpha
Helix 3
AA3
A
79 86Right-handed alpha
Helix 4
AA4
A
87 91Right-handed 310
Helix 5
AA5
A
106 118Right-handed alpha
Helix 6
AA6
A
126 132Right-handed alpha
Helix 7
AA7
A
133 144Right-handed alpha
Helix 8
AA8
A
201 205Right-handed 310
Helix 9
AA9
A
287 301Right-handed alpha
Helix 10
AB1
A
331 355Right-handed alpha
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There are 4 sheets in PDB entry 5DGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
44 49parallel
Strand 3
A
96 99parallel
Strand 4
A
120 121parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
184 188anti-parallel
Strand 4
A
197 199anti-parallel
Strand 5
A
208 215anti-parallel
Strand 6
A
218 223anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
172 175anti-parallel
Strand 3
A
178 181anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
257 263anti-parallel
Strand 3
A
245 252anti-parallel
Strand 4
A
305 313anti-parallel
Strand 5
A
316 324anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il