Analysis of interatomic Contacts of Structural Units in PDB entry:
5DGK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DGK entry

There are 2 chains in PDB entry 5DGK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	LEU 556
B	THR 4	GLU 120

There are 46 helices in PDB entry 5DGK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	74	Right-handed 310
Helix 2	AA2	A	77	83	Right-handed 310
Helix 3	AA3	A	89	91	Right-handed 310
Helix 4	AA4	A	92	107	Right-handed alpha
Helix 5	AA5	A	135	142	Right-handed alpha
Helix 6	AA6	A	159	171	Right-handed alpha
Helix 7	AA7	A	174	196	Right-handed alpha
Helix 8	AA8	A	215	225	Right-handed alpha
Helix 9	AA9	A	244	252	Right-handed alpha
Helix 10	AB1	A	265	268	Right-handed 310
Helix 11	AB2	A	273	282	Right-handed alpha
Helix 12	AB3	A	320	326	Right-handed alpha
Helix 13	AB4	A	337	351	Right-handed alpha
Helix 14	AB5	A	354	366	Right-handed alpha
Helix 15	AB6	A	366	385	Right-handed alpha
Helix 16	AB7	A	390	395	Right-handed alpha
Helix 17	AB8	A	396	415	Right-handed alpha
Helix 18	AB9	A	419	433	Right-handed alpha
Helix 19	AC1	A	434	438	Right-handed 310
Helix 20	AC2	A	439	456	Right-handed alpha
Helix 21	AC3	A	488	498	Right-handed alpha
Helix 22	AC4	A	502	513	Right-handed alpha
Helix 23	AC5	A	547	551	Right-handed 310
Helix 24	AC6	B	71	74	Right-handed 310
Helix 25	AC7	B	77	83	Right-handed 310
Helix 26	AC8	B	89	91	Right-handed 310
Helix 27	AC9	B	92	107	Right-handed alpha
Helix 28	AD1	B	135	142	Right-handed alpha
Helix 29	AD2	B	159	171	Right-handed alpha
Helix 30	AD3	B	174	196	Right-handed alpha
Helix 31	AD4	B	215	225	Right-handed alpha
Helix 32	AD5	B	244	253	Right-handed alpha
Helix 33	AD6	B	265	268	Right-handed 310
Helix 34	AD7	B	273	282	Right-handed alpha
Helix 35	AD8	B	320	326	Right-handed alpha
Helix 36	AD9	B	337	351	Right-handed alpha
Helix 37	AE1	B	354	366	Right-handed alpha
Helix 38	AE2	B	366	385	Right-handed alpha
Helix 39	AE3	B	390	395	Right-handed alpha
Helix 40	AE4	B	396	415	Right-handed alpha
Helix 41	AE5	B	419	433	Right-handed alpha
Helix 42	AE6	B	434	438	Right-handed 310
Helix 43	AE7	B	439	456	Right-handed alpha
Helix 44	AE8	B	488	498	Right-handed alpha
Helix 45	AE9	B	502	513	Right-handed alpha
Helix 46	AF1	B	547	551	Right-handed 310

There are 12 sheets in PDB entry 5DGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	11	14	anti-parallel
Strand 3	A	17	21	anti-parallel
Strand 4	A	33	37	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	69	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	41	47	anti-parallel
Strand 4	A	109	110	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	147	149	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	124	128	anti-parallel
Strand 3	A	116	121	anti-parallel
Strand 4	A	255	256	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	260	263	parallel
Strand 3	A	305	309	parallel
Strand 4	A	205	209	parallel
Strand 5	A	327	330	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	473	478	parallel
Strand 3	A	481	487	anti-parallel
Strand 4	A	541	546	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	11	14	anti-parallel
Strand 3	B	17	21	anti-parallel
Strand 4	B	33	37	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	69	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	41	47	anti-parallel
Strand 4	B	109	110	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	147	149	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	124	128	anti-parallel
Strand 3	B	116	121	anti-parallel
Strand 4	B	255	256	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	260	263	parallel
Strand 3	B	305	309	parallel
Strand 4	B	205	209	parallel
Strand 5	B	327	330	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	473	478	parallel
Strand 3	B	481	487	anti-parallel
Strand 4	B	541	546	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DGK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DGK