Analysis of interatomic Contacts of Structural Units in PDB entry:
5DGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DGO entry

There is 1 chain in PDB entry 5DGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5DGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
26 43Right-handed alpha
Helix 3
AA3
A
54 66Right-handed alpha
Helix 4
AA4
A
82 88Right-handed alpha
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
129 134Right-handed alpha
Helix 7
AA7
A
164 190Right-handed alpha
Helix 8
AA8
A
197 209Right-handed alpha
Helix 9
AA9
A
213 230Right-handed alpha
Helix 10
AB1
A
234 256Right-handed alpha
Helix 11
AB2
A
280 284Right-handed 310
Helix 12
AB3
A
285 293Right-handed alpha
Helix 13
AB4
A
293 300Right-handed alpha
Helix 14
AB5
A
304 319Right-handed alpha
Helix 15
AB6
A
321 327Right-handed alpha
Helix 16
AB7
A
328 332Right-handed 310
Helix 17
AB8
A
333 351Right-handed alpha
Helix 18
AB9
A
373 385Right-handed alpha
Helix 19
AC1
A
392 404Right-handed alpha
Helix 20
AC2
A
409 436Right-handed alpha
Helix 21
AC3
A
456 460Right-handed 310
Helix 22
AC4
A
462 481Right-handed alpha
Helix 23
AC5
A
485 489Right-handed 310
Helix 24
AC6
A
521 532Right-handed alpha
Helix 25
AC7
A
553 566Right-handed alpha
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There are 4 sheets in PDB entry 5DGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
18 24parallel
Strand 3
A
71 75parallel
Strand 4
A
94 98parallel
Strand 5
A
115 117parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
193 194anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 276first strand
Strand 2
A
357 366anti-parallel
Strand 3
A
369 372anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
A
446 449anti-parallel
Strand 3
A
491 498parallel
Strand 4
A
503 509anti-parallel
Strand 5
A
546 550anti-parallel
Strand 6
A
537 538anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il