Analysis of interatomic Contacts of Structural Units in PDB entry:
5DGR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DGR entry

There are 2 chains in PDB entry 5DGR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 578
B	MET 1	VAL 578

There are 38 helices in PDB entry 5DGR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	109	Right-handed alpha
Helix 2	AA2	A	112	120	Right-handed alpha
Helix 3	AA3	A	151	155	Right-handed 310
Helix 4	AA4	A	161	177	Right-handed alpha
Helix 5	AA5	A	183	204	Right-handed alpha
Helix 6	AA6	A	249	261	Right-handed alpha
Helix 7	AA7	A	262	265	Right-handed 310
Helix 8	AA8	A	266	272	Right-handed alpha
Helix 9	AA9	A	279	302	Right-handed alpha
Helix 10	AB1	A	308	327	Right-handed alpha
Helix 11	AB2	A	328	344	Right-handed alpha
Helix 12	AB3	A	373	384	Right-handed alpha
Helix 13	AB4	A	388	412	Right-handed alpha
Helix 14	AB5	A	450	468	Right-handed alpha
Helix 15	AB6	A	470	489	Right-handed alpha
Helix 16	AB7	A	510	514	Right-handed 310
Helix 17	AB8	A	550	555	Right-handed alpha
Helix 18	AB9	A	557	574	Right-handed alpha
Helix 19	AC1	B	92	109	Right-handed alpha
Helix 20	AC2	B	112	120	Right-handed alpha
Helix 21	AC3	B	151	155	Right-handed 310
Helix 22	AC4	B	161	177	Right-handed alpha
Helix 23	AC5	B	183	204	Right-handed alpha
Helix 24	AC6	B	245	248	Right-handed 310
Helix 25	AC7	B	249	262	Right-handed alpha
Helix 26	AC8	B	263	265	Right-handed 310
Helix 27	AC9	B	266	272	Right-handed alpha
Helix 28	AD1	B	280	302	Right-handed alpha
Helix 29	AD2	B	308	327	Right-handed alpha
Helix 30	AD3	B	328	344	Right-handed alpha
Helix 31	AD4	B	373	384	Right-handed alpha
Helix 32	AD5	B	388	412	Right-handed alpha
Helix 33	AD6	B	450	464	Right-handed alpha
Helix 34	AD7	B	465	467	Right-handed 310
Helix 35	AD8	B	470	489	Right-handed alpha
Helix 36	AD9	B	510	514	Right-handed 310
Helix 37	AE1	B	550	555	Right-handed alpha
Helix 38	AE2	B	557	574	Right-handed alpha

There are 16 sheets in PDB entry 5DGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	17	22	anti-parallel
Strand 3	A	60	65	anti-parallel
Strand 4	A	48	49	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	87	90	parallel
Strand 3	A	73	79	anti-parallel
Strand 4	A	30	35	anti-parallel
Strand 5	A	40	46	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	87	90	parallel
Strand 3	A	73	79	anti-parallel
Strand 4	A	82	83	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	130	131	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	214	216	anti-parallel
Strand 3	A	227	228	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	237	239	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	355	356	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	424	first strand
Strand 2	A	432	434	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	17	22	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	48	50	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	87	90	parallel
Strand 3	B	73	79	anti-parallel
Strand 4	B	30	35	anti-parallel
Strand 5	B	40	46	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	87	90	parallel
Strand 3	B	73	79	anti-parallel
Strand 4	B	82	83	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	130	131	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	214	216	anti-parallel
Strand 3	B	227	228	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	237	239	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	355	356	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	424	first strand
Strand 2	B	432	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DGR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DGR