Analysis of interatomic Contacts of Structural Units in PDB entry:
5DGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DGX entry

There is 1 chain in PDB entry 5DGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 358GLN 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5DGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
409 418Right-handed alpha
Helix 2
AA2
A
436 438Right-handed 310
Helix 3
AA3
A
439 446Right-handed alpha
Helix 4
AA4
A
460 467Right-handed alpha
Helix 5
AA5
A
474 485Right-handed alpha
Helix 6
AA6
A
487 493Right-handed alpha
Helix 7
AA7
A
496 500Right-handed 310
Helix 8
AA8
A
503 507Right-handed 310
Helix 9
AA9
A
510 526Right-handed alpha
Helix 10
AB1
A
552 557Right-handed alpha
Helix 11
AB2
A
566 573Right-handed alpha
Helix 12
AB3
A
589 596Right-handed alpha
Helix 13
AB4
A
598 606Right-handed alpha
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There are 2 sheets in PDB entry 5DGX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 394first strand
Strand 2
A
372 381anti-parallel
Strand 3
A
425 430anti-parallel
Strand 4
A
433 434anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 450first strand
Strand 2
A
529 533parallel
Strand 3
A
559 563parallel
Strand 4
A
399 403parallel
Strand 5
A
575 580parallel
Strand 6
A
583 588anti-parallel
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