Analysis of interatomic Contacts of Structural Units in PDB entry:
5DH1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DH1 entry

There are 4 chains in PDB entry 5DH1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 59	LEU 361
B	HIS 59	LEU 361
C	HIS 61	LEU 361
D	HIS 60	LEU 361

There are 60 helices in PDB entry 5DH1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	110	Right-handed alpha
Helix 2	AA2	A	121	125	Right-handed 310
Helix 3	AA3	A	126	134	Right-handed alpha
Helix 4	AA4	A	147	154	Right-handed alpha
Helix 5	AA5	A	167	179	Right-handed alpha
Helix 6	AA6	A	194	207	Right-handed alpha
Helix 7	AA7	A	209	231	Right-handed alpha
Helix 8	AA8	A	231	238	Right-handed alpha
Helix 9	AA9	A	257	267	Right-handed alpha
Helix 10	AB1	A	272	275	Right-handed 310
Helix 11	AB2	A	288	296	Right-handed 310
Helix 12	AB3	A	310	319	Right-handed alpha
Helix 13	AB4	A	320	324	Right-handed 310
Helix 14	AB5	A	325	330	Right-handed alpha
Helix 15	AB6	A	343	360	Right-handed alpha
Helix 16	AB7	B	103	111	Right-handed alpha
Helix 17	AB8	B	126	135	Right-handed alpha
Helix 18	AB9	B	147	155	Right-handed alpha
Helix 19	AC1	B	167	179	Right-handed alpha
Helix 20	AC2	B	194	208	Right-handed alpha
Helix 21	AC3	B	209	231	Right-handed alpha
Helix 22	AC4	B	231	238	Right-handed alpha
Helix 23	AC5	B	257	267	Right-handed alpha
Helix 24	AC6	B	272	278	Right-handed 310
Helix 25	AC7	B	288	296	Right-handed 310
Helix 26	AC8	B	310	319	Right-handed alpha
Helix 27	AC9	B	320	324	Right-handed 310
Helix 28	AD1	B	325	330	Right-handed alpha
Helix 29	AD2	B	343	361	Right-handed alpha
Helix 30	AD3	C	102	110	Right-handed alpha
Helix 31	AD4	C	121	125	Right-handed 310
Helix 32	AD5	C	126	134	Right-handed alpha
Helix 33	AD6	C	147	154	Right-handed alpha
Helix 34	AD7	C	167	179	Right-handed alpha
Helix 35	AD8	C	193	207	Right-handed alpha
Helix 36	AD9	C	209	231	Right-handed alpha
Helix 37	AE1	C	231	238	Right-handed alpha
Helix 38	AE2	C	257	266	Right-handed alpha
Helix 39	AE3	C	274	278	Right-handed 310
Helix 40	AE4	C	286	294	Right-handed 310
Helix 41	AE5	C	310	318	Right-handed alpha
Helix 42	AE6	C	320	324	Right-handed 310
Helix 43	AE7	C	325	330	Right-handed alpha
Helix 44	AE8	C	343	360	Right-handed alpha
Helix 45	AE9	D	102	111	Right-handed alpha
Helix 46	AF1	D	121	125	Right-handed 310
Helix 47	AF2	D	126	134	Right-handed alpha
Helix 48	AF3	D	147	154	Right-handed alpha
Helix 49	AF4	D	166	168	Right-handed 310
Helix 50	AF5	D	169	179	Right-handed alpha
Helix 51	AF6	D	193	207	Right-handed alpha
Helix 52	AF7	D	209	231	Right-handed alpha
Helix 53	AF8	D	231	238	Right-handed alpha
Helix 54	AF9	D	257	266	Right-handed alpha
Helix 55	AG1	D	272	278	Right-handed 310
Helix 56	AG2	D	289	294	Right-handed 310
Helix 57	AG3	D	310	317	Right-handed alpha
Helix 58	AG4	D	319	324	Right-handed alpha
Helix 59	AG5	D	325	330	Right-handed alpha
Helix 60	AG6	D	343	361	Right-handed alpha

There are 12 sheets in PDB entry 5DH1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	116	118	parallel
Strand 3	A	97	99	parallel
Strand 4	A	158	164	parallel
Strand 5	A	184	189	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	239	245	parallel
Strand 3	A	249	253	anti-parallel
Strand 4	A	282	286	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	239	245	parallel
Strand 3	A	298	302	parallel
Strand 4	A	333	336	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	B	116	118	parallel
Strand 3	B	97	99	parallel
Strand 4	B	158	164	parallel
Strand 5	B	184	189	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	270	first strand
Strand 2	B	239	246	parallel
Strand 3	B	249	253	anti-parallel
Strand 4	B	282	286	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	270	first strand
Strand 2	B	239	246	parallel
Strand 3	B	298	302	parallel
Strand 4	B	333	336	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	140	first strand
Strand 2	C	116	118	parallel
Strand 3	C	97	99	parallel
Strand 4	C	158	164	parallel
Strand 5	C	184	189	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	270	first strand
Strand 2	C	239	246	parallel
Strand 3	C	249	253	anti-parallel
Strand 4	C	282	285	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	270	first strand
Strand 2	C	239	246	parallel
Strand 3	C	298	302	parallel
Strand 4	C	333	336	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	140	first strand
Strand 2	D	116	118	parallel
Strand 3	D	97	99	parallel
Strand 4	D	158	164	parallel
Strand 5	D	184	189	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	270	first strand
Strand 2	D	239	245	parallel
Strand 3	D	249	253	anti-parallel
Strand 4	D	282	286	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	270	first strand
Strand 2	D	239	245	parallel
Strand 3	D	298	302	parallel
Strand 4	D	333	336	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DH1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DH1