Analysis of interatomic Contacts of Structural Units in PDB entry:
5DH2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DH2 entry

There are 2 chains in PDB entry 5DH2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 59LEU 361
B
 HIS 58LEU 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5DH2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 110Right-handed alpha
Helix 2
AA2
A
121 125Right-handed 310
Helix 3
AA3
A
126 134Right-handed alpha
Helix 4
AA4
A
147 155Right-handed alpha
Helix 5
AA5
A
167 180Right-handed alpha
Helix 6
AA6
A
194 207Right-handed alpha
Helix 7
AA7
A
209 231Right-handed alpha
Helix 8
AA8
A
233 238Right-handed alpha
Helix 9
AA9
A
257 267Right-handed alpha
Helix 10
AB1
A
272 278Right-handed 310
Helix 11
AB2
A
288 294Right-handed 310
Helix 12
AB3
A
310 317Right-handed alpha
Helix 13
AB4
A
321 325Right-handed 310
Helix 14
AB5
A
343 359Right-handed alpha
Helix 15
AB6
B
102 110Right-handed alpha
Helix 16
AB7
B
121 125Right-handed 310
Helix 17
AB8
B
126 134Right-handed alpha
Helix 18
AB9
B
147 155Right-handed alpha
Helix 19
AC1
B
167 179Right-handed alpha
Helix 20
AC2
B
193 207Right-handed alpha
Helix 21
AC3
B
209 231Right-handed alpha
Helix 22
AC4
B
231 238Right-handed alpha
Helix 23
AC5
B
257 267Right-handed alpha
Helix 24
AC6
B
272 278Right-handed 310
Helix 25
AC7
B
288 296Right-handed 310
Helix 26
AC8
B
310 319Right-handed alpha
Helix 27
AC9
B
321 325Right-handed 310
Helix 28
AD1
B
343 360Right-handed alpha
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There are 6 sheets in PDB entry 5DH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
116 118parallel
Strand 3
A
97 99parallel
Strand 4
A
158 164parallel
Strand 5
A
184 189parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
239 245parallel
Strand 3
A
249 253anti-parallel
Strand 4
A
282 286anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
239 245parallel
Strand 3
A
298 302parallel
Strand 4
A
333 336parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
116 118parallel
Strand 3
B
97 99parallel
Strand 4
B
158 164parallel
Strand 5
B
184 189parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 270first strand
Strand 2
B
239 245parallel
Strand 3
B
249 253anti-parallel
Strand 4
B
282 286anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 270first strand
Strand 2
B
239 245parallel
Strand 3
B
298 302parallel
Strand 4
B
333 336parallel
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