Analysis of interatomic Contacts of Structural Units in PDB entry:
5DH3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DH3 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 5DH3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 19ASP 173
A
 MET 175ASN 179
A
 VAL 181ARG 307
B
 SER 18ASP 173
B
 MET 175ASN 179
B
 VAL 181HIS 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5DH3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed alpha
Helix 2
AA2
A
63 77Right-handed alpha
Helix 3
AA3
A
107 115Right-handed alpha
Helix 4
AA4
A
119 140Right-handed alpha
Helix 5
AA5
A
148 150Right-handed 310
Helix 6
AA6
A
184 188Right-handed 310
Helix 7
AA7
A
189 195Right-handed alpha
Helix 8
AA8
A
201 217Right-handed alpha
Helix 9
AA9
A
225 236Right-handed alpha
Helix 10
AB1
A
248 259Right-handed alpha
Helix 11
AB2
A
268 275Right-handed alpha
Helix 12
AB3
A
275 280Right-handed alpha
Helix 13
AB4
A
283 286Right-handed 310
Helix 14
AB5
A
287 307Right-handed alpha
Helix 15
AB6
B
22 26Right-handed alpha
Helix 16
AB7
B
63 77Right-handed alpha
Helix 17
AB8
B
107 115Right-handed alpha
Helix 18
AB9
B
119 140Right-handed alpha
Helix 19
AC1
B
148 150Right-handed 310
Helix 20
AC2
B
184 188Right-handed 310
Helix 21
AC3
B
189 194Right-handed alpha
Helix 22
AC4
B
201 217Right-handed alpha
Helix 23
AC5
B
225 236Right-handed alpha
Helix 24
AC6
B
248 259Right-handed alpha
Helix 25
AC7
B
268 274Right-handed alpha
Helix 26
AC8
B
275 280Right-handed alpha
Helix 27
AC9
B
283 286Right-handed 310
Helix 28
AD1
B
287 302Right-handed alpha
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There are 6 sheets in PDB entry 5DH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 35first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
51 59anti-parallel
Strand 4
A
94 100anti-parallel
Strand 5
A
85 91anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
152 154anti-parallel
Strand 3
A
160 162anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
169 170anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 36first strand
Strand 2
B
39 46anti-parallel
Strand 3
B
52 58anti-parallel
Strand 4
B
94 100anti-parallel
Strand 5
B
85 91anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
152 154anti-parallel
Strand 3
B
160 162anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
169 170anti-parallel
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