Analysis of interatomic Contacts of Structural Units in PDB entry:
5DHA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DHA entry

There are 3 chains in PDB entry 5DHA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9LEU 216
B
 PHE 65LYS 200
C
 SER 0LYS 961
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 5DHA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed alpha
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
75 81Right-handed 310
Helix 4
AA4
A
94 100Right-handed alpha
Helix 5
AA5
A
100 112Right-handed alpha
Helix 6
AA6
A
158 170Right-handed alpha
Helix 7
AA7
A
193 206Right-handed alpha
Helix 8
AA8
B
180 200Right-handed alpha
Helix 9
AA9
C
12 26Right-handed alpha
Helix 10
AB1
C
27 43Right-handed alpha
Helix 11
AB2
C
46 49Right-handed 310
Helix 12
AB3
C
50 58Right-handed alpha
Helix 13
AB4
C
60 78Right-handed alpha
Helix 14
AB5
C
83 104Right-handed alpha
Helix 15
AB6
C
104 111Right-handed alpha
Helix 16
AB7
C
111 130Right-handed alpha
Helix 17
AB8
C
136 145Right-handed alpha
Helix 18
AB9
C
148 168Right-handed alpha
Helix 19
AC1
C
175 189Right-handed alpha
Helix 20
AC2
C
189 204Right-handed alpha
Helix 21
AC3
C
206 221Right-handed alpha
Helix 22
AC4
C
226 231Right-handed alpha
Helix 23
AC5
C
233 239Right-handed alpha
Helix 24
AC6
C
240 244Right-handed 310
Helix 25
AC7
C
245 261Right-handed alpha
Helix 26
AC8
C
268 290Right-handed alpha
Helix 27
AC9
C
296 304Right-handed alpha
Helix 28
AD1
C
307 327Right-handed alpha
Helix 29
AD2
C
327 333Right-handed alpha
Helix 30
AD3
C
336 352Right-handed alpha
Helix 31
AD4
C
355 376Right-handed alpha
Helix 32
AD5
C
420 434Right-handed alpha
Helix 33
AD6
C
462 479Right-handed alpha
Helix 34
AD7
C
479 496Right-handed alpha
Helix 35
AD8
C
501 515Right-handed alpha
Helix 36
AD9
C
520 542Right-handed alpha
Helix 37
AE1
C
544 562Right-handed alpha
Helix 38
AE2
C
562 569Right-handed alpha
Helix 39
AE3
C
569 584Right-handed alpha
Helix 40
AE4
C
590 606Right-handed alpha
Helix 41
AE5
C
607 610Right-handed 310
Helix 42
AE6
C
620 628Right-handed alpha
Helix 43
AE7
C
628 633Right-handed alpha
Helix 44
AE8
C
637 653Right-handed alpha
Helix 45
AE9
C
657 669Right-handed alpha
Helix 46
AF1
C
669 686Right-handed alpha
Helix 47
AF2
C
687 691Right-handed 310
Helix 48
AF3
C
692 714Right-handed alpha
Helix 49
AF4
C
717 747Right-handed alpha
Helix 50
AF5
C
748 752Right-handed 310
Helix 51
AF6
C
753 777Right-handed alpha
Helix 52
AF7
C
779 787Right-handed alpha
Helix 53
AF8
C
787 801Right-handed alpha
Helix 54
AF9
C
803 807Right-handed 310
Helix 55
AG1
C
809 823Right-handed alpha
Helix 56
AG2
C
826 846Right-handed alpha
Helix 57
AG3
C
852 869Right-handed alpha
Helix 58
AG4
C
871 877Right-handed alpha
Helix 59
AG5
C
878 894Right-handed alpha
Helix 60
AG6
C
897 917Right-handed alpha
Helix 61
AG7
C
921 945Right-handed alpha
Helix 62
AG8
C
948 950Right-handed 310
Helix 63
AG9
C
951 968Right-handed alpha
Helix 64
AH1
C
986 1003Right-handed alpha
Helix 65
AH2
C
1007 1020Right-handed alpha
Helix 66
AH3
C
1024 1039Right-handed alpha
Helix 67
AH4
C
1045 1051Right-handed 310
Helix 68
AH5
D
7 15Right-handed alpha
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There are 2 sheets in PDB entry 5DHA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 54first strand
Strand 2
A
57 66anti-parallel
Strand 3
A
10 17parallel
Strand 4
A
85 91parallel
Strand 5
A
117 122parallel
Strand 6
A
145 148parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 139first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
103 116anti-parallel
Strand 4
B
83 96anti-parallel
Strand 5
B
170 177anti-parallel
Strand 6
B
155 163anti-parallel
Strand 7
B
147 148anti-parallel
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