Analysis of interatomic Contacts of Structural Units in PDB entry:
5DHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DHE entry

There are 2 chains in PDB entry 5DHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 764TRP 863
B
 GLY 764TRP 863
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 5DHE

There are 4 sheets in PDB entry 5DHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 778first strand
Strand 2
A
781 789anti-parallel
Strand 3
A
835 843anti-parallel
Strand 4
A
808 812anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
814 819first strand
Strand 2
A
822 827anti-parallel
Strand 3
A
797 802anti-parallel
Strand 4
A
848 855anti-parallel
Strand 5
A
858 863anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
772 778first strand
Strand 2
B
781 789anti-parallel
Strand 3
B
835 843anti-parallel
Strand 4
B
808 812anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
814 819first strand
Strand 2
B
822 827anti-parallel
Strand 3
B
797 802anti-parallel
Strand 4
B
848 855anti-parallel
Strand 5
B
858 863anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il