Analysis of interatomic Contacts of Structural Units in PDB entry:
5DHL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DHL entry

There are 2 chains in PDB entry 5DHL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 34	ASN 500
B	LYS 34	ASN 500

There are 28 helices in PDB entry 5DHL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	44	Right-handed alpha
Helix 2	AA2	A	95	102	Right-handed 310
Helix 3	AA3	A	111	116	Right-handed alpha
Helix 4	AA4	A	150	167	Right-handed alpha
Helix 5	AA5	A	188	197	Right-handed alpha
Helix 6	AA6	A	199	208	Right-handed alpha
Helix 7	AA7	A	210	216	Right-handed alpha
Helix 8	AA8	A	240	244	Right-handed 310
Helix 9	AA9	A	250	257	Right-handed alpha
Helix 10	AB1	A	289	300	Right-handed alpha
Helix 11	AB2	A	306	315	Right-handed alpha
Helix 12	AB3	A	337	348	Right-handed alpha
Helix 13	AB4	A	463	467	Right-handed 310
Helix 14	AB5	B	37	44	Right-handed alpha
Helix 15	AB6	B	48	53	Right-handed alpha
Helix 16	AB7	B	95	102	Right-handed 310
Helix 17	AB8	B	111	116	Right-handed alpha
Helix 18	AB9	B	150	169	Right-handed alpha
Helix 19	AC1	B	188	197	Right-handed alpha
Helix 20	AC2	B	199	207	Right-handed alpha
Helix 21	AC3	B	210	216	Right-handed alpha
Helix 22	AC4	B	240	245	Right-handed 310
Helix 23	AC5	B	250	257	Right-handed alpha
Helix 24	AC6	B	289	300	Right-handed alpha
Helix 25	AC7	B	301	305	Right-handed 310
Helix 26	AC8	B	306	315	Right-handed alpha
Helix 27	AC9	B	337	348	Right-handed alpha
Helix 28	AD1	B	463	467	Right-handed 310

There are 16 sheets in PDB entry 5DHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	376	390	parallel
Strand 3	A	74	85	anti-parallel
Strand 4	A	66	71	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	129	133	anti-parallel
Strand 3	A	220	235	anti-parallel
Strand 4	A	178	185	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	185	first strand
Strand 2	A	220	235	anti-parallel
Strand 3	A	265	283	anti-parallel
Strand 4	A	316	323	anti-parallel
Strand 5	A	333	335	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	316	323	anti-parallel
Strand 3	A	265	283	anti-parallel
Strand 4	A	107	109	anti-parallel
Strand 5	A	120	121	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	107	109	anti-parallel
Strand 3	A	265	283	anti-parallel
Strand 4	A	358	366	anti-parallel
Strand 5	A	92	93	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	358	366	anti-parallel
Strand 3	A	371	372	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	350	352	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	445	first strand
Strand 2	A	392	398	anti-parallel
Strand 3	A	482	488	parallel
Strand 4	A	493	499	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	427	first strand
Strand 2	A	404	415	anti-parallel
Strand 3	A	449	458	anti-parallel
Strand 4	A	468	476	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	376	390	parallel
Strand 3	B	74	87	anti-parallel
Strand 4	B	66	70	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	359	366	anti-parallel
Strand 3	B	265	283	anti-parallel
Strand 4	B	107	109	anti-parallel
Strand 5	B	120	121	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	107	109	anti-parallel
Strand 3	B	265	283	anti-parallel
Strand 4	B	220	235	anti-parallel
Strand 5	B	129	133	anti-parallel
Strand 6	B	143	146	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	316	324	anti-parallel
Strand 3	B	265	283	anti-parallel
Strand 4	B	220	235	anti-parallel
Strand 5	B	178	185	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	350	352	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	445	first strand
Strand 2	B	392	398	anti-parallel
Strand 3	B	481	488	parallel
Strand 4	B	493	500	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	427	first strand
Strand 2	B	404	415	anti-parallel
Strand 3	B	449	458	anti-parallel
Strand 4	B	468	476	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DHL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DHL