Analysis of interatomic Contacts of Structural Units in PDB entry:
5DHQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DHQ entry

There are 4 chains in PDB entry 5DHQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 264
B	MET 1	HIS 267
C	MET 1	GLU 263
D	MET 1	GLU 263

There are 31 helices in PDB entry 5DHQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	25	Right-handed alpha
Helix 2	AA2	A	44	55	Right-handed alpha
Helix 3	AA3	A	79	81	Right-handed 310
Helix 4	AA4	A	82	93	Right-handed alpha
Helix 5	AA5	A	157	161	Right-handed 310
Helix 6	AA6	A	162	167	Right-handed alpha
Helix 7	AA7	A	252	262	Right-handed alpha
Helix 8	AA8	B	10	26	Right-handed alpha
Helix 9	AA9	B	44	54	Right-handed alpha
Helix 10	AB1	B	58	61	Right-handed 310
Helix 11	AB2	B	79	81	Right-handed 310
Helix 12	AB3	B	82	92	Right-handed alpha
Helix 13	AB4	B	162	167	Right-handed alpha
Helix 14	AB5	B	252	262	Right-handed alpha
Helix 15	AB6	C	10	22	Right-handed alpha
Helix 16	AB7	C	23	25	Right-handed 310
Helix 17	AB8	C	44	55	Right-handed alpha
Helix 18	AB9	C	58	61	Right-handed 310
Helix 19	AC1	C	79	81	Right-handed 310
Helix 20	AC2	C	82	92	Right-handed alpha
Helix 21	AC3	C	157	161	Right-handed 310
Helix 22	AC4	C	162	167	Right-handed alpha
Helix 23	AC5	C	252	262	Right-handed alpha
Helix 24	AC6	D	10	22	Right-handed alpha
Helix 25	AC7	D	44	54	Right-handed alpha
Helix 26	AC8	D	58	61	Right-handed 310
Helix 27	AC9	D	79	81	Right-handed 310
Helix 28	AD1	D	82	91	Right-handed alpha
Helix 29	AD2	D	157	161	Right-handed 310
Helix 30	AD3	D	162	167	Right-handed alpha
Helix 31	AD4	D	252	262	Right-handed alpha

There are 11 sheets in PDB entry 5DHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	2	7	parallel
Strand 3	A	38	43	parallel
Strand 4	A	63	68	parallel
Strand 5	A	231	247	parallel
Strand 6	A	207	211	anti-parallel
Strand 7	A	133	139	anti-parallel
Strand 8	A	142	155	anti-parallel
Strand 9	A	123	128	anti-parallel
Strand 10	A	217	221	anti-parallel
Strand 11	A	224	228	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	120	first strand
Strand 2	A	96	109	anti-parallel
Strand 3	A	231	247	anti-parallel
Strand 4	A	207	211	anti-parallel
Strand 5	A	133	139	anti-parallel
Strand 6	A	142	155	anti-parallel
Strand 7	A	178	186	anti-parallel
Strand 8	A	199	202	anti-parallel
Strand 9	B	171	172	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	B	199	201	parallel
Strand 3	B	179	184	anti-parallel
Strand 4	B	143	155	anti-parallel
Strand 5	B	132	139	anti-parallel
Strand 6	B	207	211	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	B	199	201	parallel
Strand 3	B	179	184	anti-parallel
Strand 4	B	143	155	anti-parallel
Strand 5	B	123	129	anti-parallel
Strand 6	B	217	221	anti-parallel
Strand 7	B	225	228	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	38	43	parallel
Strand 3	B	63	68	parallel
Strand 4	B	233	246	parallel
Strand 5	B	97	108	anti-parallel
Strand 6	B	116	120	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	2	7	parallel
Strand 3	C	38	43	parallel
Strand 4	C	63	68	parallel
Strand 5	C	231	245	parallel
Strand 6	C	98	109	anti-parallel
Strand 7	C	115	120	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	63	68	parallel
Strand 3	C	231	245	parallel
Strand 4	C	207	211	anti-parallel
Strand 5	C	133	139	anti-parallel
Strand 6	C	143	149	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	228	first strand
Strand 2	C	217	221	anti-parallel
Strand 3	C	123	128	anti-parallel
Strand 4	C	151	155	anti-parallel
Strand 5	C	179	184	anti-parallel
Strand 6	C	199	201	anti-parallel
Strand 7	D	171	172	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	D	199	201	parallel
Strand 3	D	179	184	anti-parallel
Strand 4	D	151	155	anti-parallel
Strand 5	D	123	128	anti-parallel
Strand 6	D	217	221	anti-parallel
Strand 7	D	224	228	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	38	43	parallel
Strand 3	D	63	68	parallel
Strand 4	D	243	247	parallel
Strand 5	D	96	100	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	120	first strand
Strand 2	D	103	108	anti-parallel
Strand 3	D	233	238	anti-parallel
Strand 4	D	207	211	anti-parallel
Strand 5	D	133	139	anti-parallel
Strand 6	D	142	149	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DHQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DHQ