Analysis of interatomic Contacts of Structural Units in PDB entry:
5DHS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DHS entry

There are 4 chains in PDB entry 5DHS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 264
B	MET 1	HIS 267
C	MET 1	GLU 263
D	LYS 2	GLU 263

There are 29 helices in PDB entry 5DHS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	24	Right-handed alpha
Helix 2	AA2	A	44	55	Right-handed alpha
Helix 3	AA3	A	58	61	Right-handed 310
Helix 4	AA4	A	79	81	Right-handed 310
Helix 5	AA5	A	82	93	Right-handed alpha
Helix 6	AA6	A	162	167	Right-handed alpha
Helix 7	AA7	A	252	262	Right-handed alpha
Helix 8	AA8	B	10	24	Right-handed alpha
Helix 9	AA9	B	25	27	Right-handed 310
Helix 10	AB1	B	44	55	Right-handed alpha
Helix 11	AB2	B	58	61	Right-handed 310
Helix 12	AB3	B	79	81	Right-handed 310
Helix 13	AB4	B	82	93	Right-handed alpha
Helix 14	AB5	B	162	167	Right-handed alpha
Helix 15	AB6	B	252	262	Right-handed alpha
Helix 16	AB7	C	10	24	Right-handed alpha
Helix 17	AB8	C	44	55	Right-handed alpha
Helix 18	AB9	C	58	61	Right-handed 310
Helix 19	AC1	C	79	81	Right-handed 310
Helix 20	AC2	C	82	93	Right-handed alpha
Helix 21	AC3	C	162	167	Right-handed alpha
Helix 22	AC4	C	252	262	Right-handed alpha
Helix 23	AC5	D	10	23	Right-handed alpha
Helix 24	AC6	D	44	54	Right-handed alpha
Helix 25	AC7	D	58	61	Right-handed 310
Helix 26	AC8	D	79	84	Right-handed 310
Helix 27	AC9	D	85	90	Right-handed alpha
Helix 28	AD1	D	162	167	Right-handed alpha
Helix 29	AD2	D	252	262	Right-handed alpha

There are 16 sheets in PDB entry 5DHS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	38	43	parallel
Strand 3	A	63	68	parallel
Strand 4	A	76	79	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	100	first strand
Strand 2	A	243	247	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	120	first strand
Strand 2	A	103	109	anti-parallel
Strand 3	A	231	238	anti-parallel
Strand 4	A	207	211	anti-parallel
Strand 5	A	133	139	anti-parallel
Strand 6	A	143	149	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	228	first strand
Strand 2	A	217	221	anti-parallel
Strand 3	A	123	127	anti-parallel
Strand 4	A	151	156	anti-parallel
Strand 5	A	179	184	anti-parallel
Strand 6	A	199	201	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	38	43	parallel
Strand 3	B	63	68	parallel
Strand 4	B	76	79	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	100	first strand
Strand 2	B	243	247	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	102	108	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	207	211	anti-parallel
Strand 5	B	133	139	anti-parallel
Strand 6	B	143	149	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	228	first strand
Strand 2	B	217	221	anti-parallel
Strand 3	B	123	127	anti-parallel
Strand 4	B	151	156	anti-parallel
Strand 5	B	179	184	anti-parallel
Strand 6	B	199	201	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	38	43	parallel
Strand 3	C	63	68	parallel
Strand 4	C	76	79	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	100	first strand
Strand 2	C	243	247	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	120	first strand
Strand 2	C	102	109	anti-parallel
Strand 3	C	231	239	anti-parallel
Strand 4	C	207	211	anti-parallel
Strand 5	C	133	139	anti-parallel
Strand 6	C	143	149	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	228	first strand
Strand 2	C	217	221	anti-parallel
Strand 3	C	123	127	anti-parallel
Strand 4	C	151	156	anti-parallel
Strand 5	C	179	184	anti-parallel
Strand 6	C	199	201	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	38	43	parallel
Strand 3	D	63	68	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	243	245	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	102	108	anti-parallel
Strand 3	D	233	239	anti-parallel
Strand 4	D	207	211	anti-parallel
Strand 5	D	133	139	anti-parallel
Strand 6	D	143	149	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	228	first strand
Strand 2	D	217	221	anti-parallel
Strand 3	D	123	127	anti-parallel
Strand 4	D	151	156	anti-parallel
Strand 5	D	179	184	anti-parallel
Strand 6	D	199	201	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DHS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DHS