Analysis of interatomic Contacts of Structural Units in PDB entry:
5DI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DI3 entry

There are 2 chains in PDB entry 5DI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 17GLN 220
A
 GLU 16GLU 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5DI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
31 39Right-handed alpha
Helix 2
AA2
B
76 87Right-handed 310
Helix 3
AA3
B
98 100Right-handed 310
Helix 4
AA4
B
101 114Right-handed alpha
Helix 5
AA5
B
115 119Right-handed 310
Helix 6
AA6
B
137 146Right-handed alpha
Helix 7
AA7
B
171 187Right-handed alpha
Helix 8
AA8
B
187 215Right-handed alpha
Helix 9
AA9
A
28 37Right-handed alpha
Helix 10
AB1
A
73 81Right-handed 310
Helix 11
AB2
A
95 97Right-handed 310
Helix 12
AB3
A
98 111Right-handed alpha
Helix 13
AB4
A
112 116Right-handed 310
Helix 14
AB5
A
134 142Right-handed alpha
Helix 15
AB6
A
143 147Right-handed 310
Helix 16
AB7
A
164 178Right-handed alpha
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There are 2 sheets in PDB entry 5DI3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 60first strand
Strand 2
B
63 69anti-parallel
Strand 3
B
18 25parallel
Strand 4
B
89 95parallel
Strand 5
B
123 128parallel
Strand 6
B
154 158parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
A
152 156anti-parallel
Strand 3
A
120 125parallel
Strand 4
A
86 92parallel
Strand 5
A
17 23parallel
Strand 6
A
60 67parallel
Strand 7
A
50 57anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il