Analysis of interatomic Contacts of Structural Units in PDB entry:
5DIB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DIB entry

There are 5 chains in PDB entry 5DIB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET -20	VAL 288
A	SER 290	LYS 496
B	MET -20	VAL 288
B	SER 290	LYS 496
C	MET -20	VAL 288

There are 78 helices in PDB entry 5DIB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	62	Right-handed alpha
Helix 2	AA2	A	68	86	Right-handed alpha
Helix 3	AA3	A	86	99	Right-handed alpha
Helix 4	AA4	A	101	123	Right-handed alpha
Helix 5	AA5	A	158	174	Right-handed alpha
Helix 6	AA6	A	186	200	Right-handed alpha
Helix 7	AA7	A	212	223	Right-handed alpha
Helix 8	AA8	A	234	246	Right-handed alpha
Helix 9	AA9	A	247	249	Right-handed 310
Helix 10	AB1	A	269	283	Right-handed alpha
Helix 11	AB2	A	284	287	Right-handed 310
Helix 12	AB3	A	301	314	Right-handed alpha
Helix 13	AB4	A	333	351	Right-handed alpha
Helix 14	AB5	A	363	368	Right-handed alpha
Helix 15	AB6	A	384	389	Right-handed alpha
Helix 16	AB7	A	403	413	Right-handed alpha
Helix 17	AB8	A	426	437	Right-handed alpha
Helix 18	AB9	A	459	461	Right-handed 310
Helix 19	AC1	A	468	475	Right-handed alpha
Helix 20	AC2	B	2	6	Right-handed 310
Helix 21	AC3	B	44	62	Right-handed alpha
Helix 22	AC4	B	68	86	Right-handed alpha
Helix 23	AC5	B	86	99	Right-handed alpha
Helix 24	AC6	B	101	123	Right-handed alpha
Helix 25	AC7	B	158	174	Right-handed alpha
Helix 26	AC8	B	186	200	Right-handed alpha
Helix 27	AC9	B	212	223	Right-handed alpha
Helix 28	AD1	B	234	246	Right-handed alpha
Helix 29	AD2	B	247	249	Right-handed 310
Helix 30	AD3	B	269	283	Right-handed alpha
Helix 31	AD4	B	284	287	Right-handed 310
Helix 32	AD5	B	299	314	Right-handed alpha
Helix 33	AD6	B	333	350	Right-handed alpha
Helix 34	AD7	B	363	368	Right-handed alpha
Helix 35	AD8	B	384	389	Right-handed alpha
Helix 36	AD9	B	403	413	Right-handed alpha
Helix 37	AE1	B	426	437	Right-handed alpha
Helix 38	AE2	B	459	461	Right-handed 310
Helix 39	AE3	B	468	475	Right-handed alpha
Helix 40	AE4	C	2	6	Right-handed 310
Helix 41	AE5	C	44	62	Right-handed alpha
Helix 42	AE6	C	68	86	Right-handed alpha
Helix 43	AE7	C	86	99	Right-handed alpha
Helix 44	AE8	C	101	123	Right-handed alpha
Helix 45	AE9	C	158	174	Right-handed alpha
Helix 46	AF1	C	186	200	Right-handed alpha
Helix 47	AF2	C	212	223	Right-handed alpha
Helix 48	AF3	C	234	246	Right-handed alpha
Helix 49	AF4	C	247	249	Right-handed 310
Helix 50	AF5	C	269	283	Right-handed alpha
Helix 51	AF6	C	284	287	Right-handed 310
Helix 52	AF7	C	299	314	Right-handed alpha
Helix 53	AF8	C	333	351	Right-handed alpha
Helix 54	AF9	C	363	368	Right-handed alpha
Helix 55	AG1	C	384	389	Right-handed alpha
Helix 56	AG2	C	403	413	Right-handed alpha
Helix 57	AG3	C	426	437	Right-handed alpha
Helix 58	AG4	C	459	461	Right-handed 310
Helix 59	AG5	C	468	475	Right-handed alpha
Helix 60	AG6	D	44	62	Right-handed alpha
Helix 61	AG7	D	68	86	Right-handed alpha
Helix 62	AG8	D	86	99	Right-handed alpha
Helix 63	AG9	D	101	123	Right-handed alpha
Helix 64	AH1	D	158	174	Right-handed alpha
Helix 65	AH2	D	186	200	Right-handed alpha
Helix 66	AH3	D	212	223	Right-handed alpha
Helix 67	AH4	D	234	246	Right-handed alpha
Helix 68	AH5	D	247	249	Right-handed 310
Helix 69	AH6	D	269	283	Right-handed alpha
Helix 70	AH7	D	284	287	Right-handed 310
Helix 71	AH8	D	299	314	Right-handed alpha
Helix 72	AH9	D	333	350	Right-handed alpha
Helix 73	AI1	D	363	368	Right-handed alpha
Helix 74	AI2	D	384	389	Right-handed alpha
Helix 75	AI3	D	403	413	Right-handed alpha
Helix 76	AI4	D	426	437	Right-handed alpha
Helix 77	AI5	D	459	461	Right-handed 310
Helix 78	AI6	D	468	475	Right-handed alpha

There are 16 sheets in PDB entry 5DIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	16	18	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	36	41	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	138	146	anti-parallel
Strand 3	A	477	485	anti-parallel
Strand 4	B	441	444	parallel
Strand 5	B	419	423	parallel
Strand 6	B	261	264	parallel
Strand 7	B	294	298	parallel
Strand 8	B	395	401	parallel
Strand 9	B	375	378	parallel
Strand 10	B	353	356	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	176	180	parallel
Strand 3	A	149	153	parallel
Strand 4	A	228	232	parallel
Strand 5	A	251	255	parallel
Strand 6	A	463	464	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	356	first strand
Strand 2	A	375	378	anti-parallel
Strand 3	A	395	401	parallel
Strand 4	A	294	298	parallel
Strand 5	A	261	264	parallel
Strand 6	A	419	423	parallel
Strand 7	A	441	444	parallel
Strand 8	B	477	485	parallel
Strand 9	B	138	146	anti-parallel
Strand 10	B	128	131	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	16	18	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	36	41	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	176	180	parallel
Strand 3	B	149	153	parallel
Strand 4	B	228	232	parallel
Strand 5	B	251	255	parallel
Strand 6	B	463	464	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	16	18	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	29	first strand
Strand 2	C	36	41	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	138	146	anti-parallel
Strand 3	C	477	485	anti-parallel
Strand 4	D	441	444	parallel
Strand 5	D	419	423	parallel
Strand 6	D	261	264	parallel
Strand 7	D	294	298	parallel
Strand 8	D	395	401	parallel
Strand 9	D	375	378	parallel
Strand 10	D	353	356	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	176	180	parallel
Strand 3	C	149	153	parallel
Strand 4	C	228	232	parallel
Strand 5	C	251	255	parallel
Strand 6	C	463	464	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	356	first strand
Strand 2	C	375	378	anti-parallel
Strand 3	C	395	401	parallel
Strand 4	C	294	298	parallel
Strand 5	C	261	264	parallel
Strand 6	C	419	423	parallel
Strand 7	C	441	444	parallel
Strand 8	D	477	485	parallel
Strand 9	D	138	146	anti-parallel
Strand 10	D	128	131	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	16	18	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	29	first strand
Strand 2	D	36	41	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	176	180	parallel
Strand 3	D	149	153	parallel
Strand 4	D	228	232	parallel
Strand 5	D	251	255	parallel
Strand 6	D	463	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DIB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DIB