Analysis of interatomic Contacts of Structural Units in PDB entry:
5DIH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DIH entry

There are 6 chains in PDB entry 5DIH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 3	PHE 205
B	MET 1	PHE 205
C	ARG 7	PHE 205
D	ASP 18	PHE 205
E	GLU 6	PHE 205
F	GLU 6	PHE 205

There are 35 helices in PDB entry 5DIH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed 310
Helix 2	AA2	A	29	44	Right-handed alpha
Helix 3	AA3	A	55	57	Right-handed 310
Helix 4	AA4	A	66	82	Right-handed alpha
Helix 5	AA5	A	98	105	Right-handed 310
Helix 6	AA6	A	128	140	Right-handed alpha
Helix 7	AA7	A	167	174	Right-handed alpha
Helix 8	AA8	A	175	183	Right-handed alpha
Helix 9	AA9	B	29	44	Right-handed alpha
Helix 10	AB1	B	66	82	Right-handed alpha
Helix 11	AB2	B	98	105	Right-handed 310
Helix 12	AB3	B	128	143	Right-handed alpha
Helix 13	AB4	B	167	183	Right-handed alpha
Helix 14	AB5	B	196	200	Right-handed 310
Helix 15	AB6	C	29	42	Right-handed alpha
Helix 16	AB7	C	55	57	Right-handed 310
Helix 17	AB8	C	66	82	Right-handed alpha
Helix 18	AB9	C	128	141	Right-handed alpha
Helix 19	AC1	C	167	183	Right-handed alpha
Helix 20	AC2	D	29	44	Right-handed alpha
Helix 21	AC3	D	66	81	Right-handed alpha
Helix 22	AC4	D	99	105	Right-handed 310
Helix 23	AC5	D	128	143	Right-handed alpha
Helix 24	AC6	D	167	183	Right-handed alpha
Helix 25	AC7	E	29	44	Right-handed alpha
Helix 26	AC8	E	66	82	Right-handed alpha
Helix 27	AC9	E	101	105	Right-handed 310
Helix 28	AD1	E	128	141	Right-handed alpha
Helix 29	AD2	E	167	183	Right-handed alpha
Helix 30	AD3	F	29	44	Right-handed alpha
Helix 31	AD4	F	55	57	Right-handed 310
Helix 32	AD5	F	66	82	Right-handed alpha
Helix 33	AD6	F	101	105	Right-handed 310
Helix 34	AD7	F	128	143	Right-handed alpha
Helix 35	AD8	F	167	183	Right-handed alpha

There are 12 sheets in PDB entry 5DIH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	53	first strand
Strand 2	A	59	65	anti-parallel
Strand 3	A	21	27	anti-parallel
Strand 4	A	88	94	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	152	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	120	126	anti-parallel
Strand 4	A	186	192	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	54	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	21	27	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	152	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	120	126	anti-parallel
Strand 4	B	186	192	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	54	first strand
Strand 2	C	58	65	anti-parallel
Strand 3	C	21	27	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	152	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	186	192	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	53	first strand
Strand 2	D	59	65	anti-parallel
Strand 3	D	21	27	anti-parallel
Strand 4	D	88	94	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	152	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	120	126	anti-parallel
Strand 4	D	186	192	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	54	first strand
Strand 2	E	58	65	anti-parallel
Strand 3	E	21	27	anti-parallel
Strand 4	E	88	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	152	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	120	126	anti-parallel
Strand 4	E	186	192	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	54	first strand
Strand 2	F	58	65	anti-parallel
Strand 3	F	21	27	anti-parallel
Strand 4	F	88	94	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	152	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	120	126	anti-parallel
Strand 4	F	186	192	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DIH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DIH