Analysis of interatomic Contacts of Structural Units in PDB entry:
5DII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DII entry

There are 6 chains in PDB entry 5DII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 5	PHE 205
B	GLU 6	PHE 205
C	MET 1	PHE 205
D	ALA 4	PHE 205
E	ARG 7	PHE 205
F	PRO 5	PHE 205

There are 34 helices in PDB entry 5DII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	9	Right-handed 310
Helix 2	AA2	A	29	44	Right-handed alpha
Helix 3	AA3	A	66	82	Right-handed alpha
Helix 4	AA4	A	101	105	Right-handed 310
Helix 5	AA5	A	128	143	Right-handed alpha
Helix 6	AA6	A	167	183	Right-handed alpha
Helix 7	AA7	B	29	44	Right-handed alpha
Helix 8	AA8	B	66	82	Right-handed alpha
Helix 9	AA9	B	101	105	Right-handed 310
Helix 10	AB1	B	128	143	Right-handed alpha
Helix 11	AB2	B	167	183	Right-handed alpha
Helix 12	AB3	C	4	9	Right-handed 310
Helix 13	AB4	C	29	44	Right-handed alpha
Helix 14	AB5	C	66	82	Right-handed alpha
Helix 15	AB6	C	98	105	Right-handed 310
Helix 16	AB7	C	128	143	Right-handed alpha
Helix 17	AB8	C	167	183	Right-handed alpha
Helix 18	AB9	D	4	9	Right-handed 310
Helix 19	AC1	D	29	44	Right-handed alpha
Helix 20	AC2	D	66	82	Right-handed alpha
Helix 21	AC3	D	101	105	Right-handed 310
Helix 22	AC4	D	128	143	Right-handed alpha
Helix 23	AC5	D	167	183	Right-handed alpha
Helix 24	AC6	E	29	44	Right-handed alpha
Helix 25	AC7	E	66	82	Right-handed alpha
Helix 26	AC8	E	101	105	Right-handed 310
Helix 27	AC9	E	128	143	Right-handed alpha
Helix 28	AD1	E	167	183	Right-handed alpha
Helix 29	AD2	F	5	9	Right-handed 310
Helix 30	AD3	F	29	44	Right-handed alpha
Helix 31	AD4	F	66	82	Right-handed alpha
Helix 32	AD5	F	98	105	Right-handed 310
Helix 33	AD6	F	128	143	Right-handed alpha
Helix 34	AD7	F	167	183	Right-handed alpha

There are 12 sheets in PDB entry 5DII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	54	first strand
Strand 2	A	58	65	anti-parallel
Strand 3	A	21	27	anti-parallel
Strand 4	A	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	152	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	120	126	anti-parallel
Strand 4	A	186	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	54	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	21	27	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	152	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	120	126	anti-parallel
Strand 4	B	186	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	54	first strand
Strand 2	C	58	65	anti-parallel
Strand 3	C	21	27	anti-parallel
Strand 4	C	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	152	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	186	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	54	first strand
Strand 2	D	58	65	anti-parallel
Strand 3	D	21	27	anti-parallel
Strand 4	D	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	152	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	120	126	anti-parallel
Strand 4	D	186	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	54	first strand
Strand 2	E	58	65	anti-parallel
Strand 3	E	21	27	anti-parallel
Strand 4	E	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	152	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	120	126	anti-parallel
Strand 4	E	186	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	54	first strand
Strand 2	F	58	65	anti-parallel
Strand 3	F	21	27	anti-parallel
Strand 4	F	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	152	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	120	126	anti-parallel
Strand 4	F	186	192	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DII

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DII