Analysis of interatomic Contacts of Structural Units in PDB entry:
5DIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DIJ entry

There is 1 chain in PDB entry 5DIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 20PHE 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5DIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 40Right-handed alpha
Helix 2
AA2
A
56 65Right-handed alpha
Helix 3
AA3
A
81 96Right-handed alpha
Helix 4
AA4
A
97 99Right-handed 310
Helix 5
AA5
A
132 144Right-handed alpha
Helix 6
AA6
A
150 154Right-handed 310
Helix 7
AA7
A
186 200Right-handed alpha
Helix 8
AA8
A
208 219Right-handed alpha
Helix 9
AA9
A
223 226Right-handed 310
Helix 10
AB1
A
227 237Right-handed alpha
Helix 11
AB2
A
283 301Right-handed alpha
Helix 12
AB3
A
340 344Right-handed 310
Helix 13
AB4
A
346 360Right-handed alpha
Helix 14
AB5
A
368 377Right-handed alpha
Helix 15
AB6
A
456 477Right-handed alpha
Helix 16
AB7
A
481 485Right-handed 310
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There are 3 sheets in PDB entry 5DIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 54first strand
Strand 2
A
111 116anti-parallel
Strand 3
A
101 104anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
159 164parallel
Strand 3
A
170 178anti-parallel
Strand 4
A
68 76anti-parallel
Strand 5
A
418 426anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 273first strand
Strand 2
A
444 451anti-parallel
Strand 3
A
433 439anti-parallel
Strand 4
A
387 391parallel
Strand 5
A
304 311parallel
Strand 6
A
330 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il