Analysis of interatomic Contacts of Structural Units in PDB entry:
5DIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DIM entry

There is 1 chain in PDB entry 5DIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 36ASN 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5DIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 44Right-handed alpha
Helix 2
AA2
A
98 102Right-handed 310
Helix 3
AA3
A
111 116Right-handed alpha
Helix 4
AA4
A
150 169Right-handed alpha
Helix 5
AA5
A
188 197Right-handed alpha
Helix 6
AA6
A
199 208Right-handed alpha
Helix 7
AA7
A
210 216Right-handed alpha
Helix 8
AA8
A
240 244Right-handed 310
Helix 9
AA9
A
250 257Right-handed alpha
Helix 10
AB1
A
289 300Right-handed alpha
Helix 11
AB2
A
301 305Right-handed 310
Helix 12
AB3
A
306 315Right-handed alpha
Helix 13
AB4
A
337 348Right-handed alpha
Helix 14
AB5
A
463 467Right-handed 310
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There are 8 sheets in PDB entry 5DIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
376 387parallel
Strand 3
A
75 87anti-parallel
Strand 4
A
66 70anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
359 366anti-parallel
Strand 3
A
265 283anti-parallel
Strand 4
A
316 322anti-parallel
Strand 5
A
333 335anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
265 283anti-parallel
Strand 3
A
220 235anti-parallel
Strand 4
A
178 186anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 186first strand
Strand 2
A
220 235anti-parallel
Strand 3
A
129 133anti-parallel
Strand 4
A
143 146anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
350 352anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 445first strand
Strand 2
A
392 398anti-parallel
Strand 3
A
481 488parallel
Strand 4
A
493 500anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 427first strand
Strand 2
A
409 415anti-parallel
Strand 3
A
449 458anti-parallel
Strand 4
A
403 406anti-parallel
Strand 5
A
435 436anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 427first strand
Strand 2
A
409 415anti-parallel
Strand 3
A
449 458anti-parallel
Strand 4
A
468 476anti-parallel
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