Analysis of interatomic Contacts of Structural Units in PDB entry:
5DIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DIY entry

There are 4 chains in PDB entry 5DIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 VAL 1SER 5
Q
 VAL 1SER 5
A
 GLU 2ASP 474
B
 GLU 2ARG 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5DIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 33Right-handed alpha
Helix 2
AA2
A
45 49Right-handed 310
Helix 3
AA3
A
57 74Right-handed alpha
Helix 4
AA4
A
92 109Right-handed alpha
Helix 5
AA5
A
127 134Right-handed alpha
Helix 6
AA6
A
136 154Right-handed alpha
Helix 7
AA7
A
174 184Right-handed alpha
Helix 8
AA8
A
203 215Right-handed alpha
Helix 9
AA9
A
228 232Right-handed 310
Helix 10
AB1
A
246 249Right-handed 310
Helix 11
AB2
A
261 278Right-handed alpha
Helix 12
AB3
A
283 297Right-handed alpha
Helix 13
AB4
A
300 309Right-handed alpha
Helix 14
AB5
A
321 337Right-handed alpha
Helix 15
AB6
A
339 363Right-handed alpha
Helix 16
AB7
A
366 372Right-handed alpha
Helix 17
AB8
A
372 399Right-handed alpha
Helix 18
AB9
A
411 429Right-handed alpha
Helix 19
AC1
A
430 432Right-handed 310
Helix 20
AC2
A
439 452Right-handed alpha
Helix 21
AC3
A
452 460Right-handed alpha
Helix 22
AC4
B
19 33Right-handed alpha
Helix 23
AC5
B
57 74Right-handed alpha
Helix 24
AC6
B
92 109Right-handed alpha
Helix 25
AC7
B
127 134Right-handed alpha
Helix 26
AC8
B
136 154Right-handed alpha
Helix 27
AC9
B
174 184Right-handed alpha
Helix 28
AD1
B
203 215Right-handed alpha
Helix 29
AD2
B
228 232Right-handed 310
Helix 30
AD3
B
246 249Right-handed 310
Helix 31
AD4
B
261 278Right-handed alpha
Helix 32
AD5
B
283 297Right-handed alpha
Helix 33
AD6
B
300 309Right-handed alpha
Helix 34
AD7
B
321 337Right-handed alpha
Helix 35
AD8
B
339 363Right-handed alpha
Helix 36
AD9
B
366 372Right-handed alpha
Helix 37
AE1
B
372 397Right-handed alpha
Helix 38
AE2
B
409 429Right-handed alpha
Helix 39
AE3
B
430 432Right-handed 310
Helix 40
AE4
B
439 452Right-handed alpha
Helix 41
AE5
B
452 460Right-handed alpha
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There are 2 sheets in PDB entry 5DIY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
37 40parallel
Strand 3
A
77 82parallel
Strand 4
A
113 117parallel
Strand 5
A
160 164parallel
Strand 6
A
189 192parallel
Strand 7
A
218 222parallel
Strand 8
A
251 256parallel
Strand 9
A
6 11parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
37 40parallel
Strand 3
B
77 82parallel
Strand 4
B
113 117parallel
Strand 5
B
160 164parallel
Strand 6
B
189 192parallel
Strand 7
B
218 222parallel
Strand 8
B
251 256parallel
Strand 9
B
6 11parallel
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