Analysis of interatomic Contacts of Structural Units in PDB entry:
5DIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DIZ entry

There are 2 chains in PDB entry 5DIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 28SER 516
B
 ARG 27GLN 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5DIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 44Right-handed alpha
Helix 2
AA2
A
45 60Right-handed alpha
Helix 3
AA3
A
65 79Right-handed alpha
Helix 4
AA4
A
85 103Right-handed alpha
Helix 5
AA5
A
108 122Right-handed alpha
Helix 6
AA6
A
124 139Right-handed alpha
Helix 7
AA7
A
145 159Right-handed alpha
Helix 8
AA8
A
161 176Right-handed alpha
Helix 9
AA9
A
180 195Right-handed alpha
Helix 10
AB1
A
196 211Right-handed alpha
Helix 11
AB2
A
215 228Right-handed alpha
Helix 12
AB3
A
229 233Right-handed 310
Helix 13
AB4
A
243 254Right-handed alpha
Helix 14
AB5
A
294 310Right-handed alpha
Helix 15
AB6
A
325 335Right-handed alpha
Helix 16
AB7
A
344 350Right-handed alpha
Helix 17
AB8
A
360 375Right-handed alpha
Helix 18
AB9
A
387 391Right-handed alpha
Helix 19
AC1
A
399 409Right-handed alpha
Helix 20
AC2
A
421 433Right-handed alpha
Helix 21
AC3
A
458 462Right-handed alpha
Helix 22
AC4
B
28 42Right-handed alpha
Helix 23
AC5
B
45 60Right-handed alpha
Helix 24
AC6
B
65 79Right-handed alpha
Helix 25
AC7
B
85 103Right-handed alpha
Helix 26
AC8
B
108 122Right-handed alpha
Helix 27
AC9
B
124 137Right-handed alpha
Helix 28
AD1
B
145 159Right-handed alpha
Helix 29
AD2
B
161 175Right-handed alpha
Helix 30
AD3
B
180 194Right-handed alpha
Helix 31
AD4
B
196 211Right-handed alpha
Helix 32
AD5
B
215 228Right-handed alpha
Helix 33
AD6
B
243 253Right-handed alpha
Helix 34
AD7
B
294 310Right-handed alpha
Helix 35
AD8
B
325 334Right-handed alpha
Helix 36
AD9
B
343 350Right-handed alpha
Helix 37
AE1
B
360 376Right-handed alpha
Helix 38
AE2
B
387 395Right-handed alpha
Helix 39
AE3
B
401 410Right-handed alpha
Helix 40
AE4
B
421 433Right-handed alpha
Helix 41
AE5
B
446 450Right-handed 310
Helix 42
AE6
B
451 462Right-handed alpha
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There are 5 sheets in PDB entry 5DIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 274first strand
Strand 2
A
508 513anti-parallel
Strand 3
A
493 496anti-parallel
Strand 4
A
486 487anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 415first strand
Strand 2
A
382 386parallel
Strand 3
A
340 343parallel
Strand 4
A
435 437parallel
Strand 5
A
463 469parallel
Strand 6
A
472 476anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 274first strand
Strand 2
B
508 514anti-parallel
Strand 3
B
493 496anti-parallel
Strand 4
B
486 487anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 415first strand
Strand 2
B
382 386parallel
Strand 3
B
340 342parallel
Strand 4
B
435 437parallel
Strand 5
B
463 464parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 469first strand
Strand 2
B
472 473anti-parallel
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