Analysis of interatomic Contacts of Structural Units in PDB entry:
5DJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DJO entry

There are 2 chains in PDB entry 5DJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2PRO 159
B
 SER 0PRO 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5DJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 47Right-handed alpha
Helix 2
AA2
B
3 37Right-handed alpha
Helix 3
AA3
B
37 47Right-handed alpha
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There are 4 sheets in PDB entry 5DJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
54 57anti-parallel
Strand 3
B
78 81anti-parallel
Strand 4
B
62 66anti-parallel
Strand 5
B
152 157anti-parallel
Strand 6
B
145 148anti-parallel
Strand 7
B
127 129anti-parallel
Strand 8
B
132 133anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
127 129anti-parallel
Strand 3
A
145 148anti-parallel
Strand 4
A
152 157anti-parallel
Strand 5
A
63 66anti-parallel
Strand 6
A
78 80anti-parallel
Strand 7
B
54 57anti-parallel
Strand 8
B
48 51anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
84 88parallel
Strand 3
A
107 111anti-parallel
Strand 4
A
117 121anti-parallel
Strand 5
A
138 139anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
84 88parallel
Strand 3
B
107 111anti-parallel
Strand 4
B
117 121anti-parallel
Strand 5
B
138 139anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il