Analysis of interatomic Contacts of Structural Units in PDB entry:
5DJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DJQ entry

There are 4 chains in PDB entry 5DJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	ALA 470
B	LYS 6	LYS 202
C	MET 1	GLN 303
D	ALA 8	LEU 314

There are201 helices in PDB entry 5DJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	41	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	52	66	Right-handed alpha
Helix 4	AA4	A	67	86	Right-handed alpha
Helix 5	AA5	A	91	113	Right-handed alpha
Helix 6	AA6	A	127	151	Right-handed alpha
Helix 7	AA7	A	158	179	Right-handed alpha
Helix 8	AA8	A	194	213	Right-handed alpha
Helix 9	AA9	A	215	231	Right-handed alpha
Helix 10	AB1	A	236	251	Right-handed alpha
Helix 11	AB2	A	252	259	Right-handed 310
Helix 12	AB3	A	265	279	Right-handed alpha
Helix 13	AB4	A	279	292	Right-handed alpha
Helix 14	AB5	A	293	295	Right-handed 310
Helix 15	AB6	A	299	304	Right-handed alpha
Helix 16	AB7	A	304	328	Right-handed alpha
Helix 17	AB8	A	329	337	Right-handed alpha
Helix 18	AB9	A	339	353	Right-handed alpha
Helix 19	AC1	A	353	370	Right-handed alpha
Helix 20	AC2	A	377	412	Right-handed alpha
Helix 21	AC3	A	422	430	Right-handed alpha
Helix 22	AC4	A	430	461	Right-handed alpha
Helix 23	AC5	B	10	30	Right-handed alpha
Helix 24	AC6	B	30	36	Right-handed alpha
Helix 25	AC7	B	50	63	Right-handed alpha
Helix 26	AC8	B	64	68	Right-handed 310
Helix 27	AC9	B	76	84	Right-handed alpha
Helix 28	AD1	B	88	92	Right-handed 310
Helix 29	AD2	B	117	127	Right-handed alpha
Helix 30	AD3	B	127	132	Right-handed alpha
Helix 31	AD4	B	141	146	Right-handed alpha
Helix 32	AD5	B	152	163	Right-handed alpha
Helix 33	AD6	B	168	173	Right-handed alpha
Helix 34	AD7	B	183	193	Right-handed alpha
Helix 35	AD8	C	2	28	Right-handed alpha
Helix 36	AD9	C	55	76	Right-handed alpha
Helix 37	AE1	C	94	120	Right-handed alpha
Helix 38	AE2	C	121	128	Right-handed alpha
Helix 39	AE3	C	128	143	Right-handed alpha
Helix 40	AE4	C	143	148	Right-handed alpha
Helix 41	AE5	C	170	181	Right-handed alpha
Helix 42	AE6	C	189	194	Right-handed alpha
Helix 43	AE7	C	194	208	Right-handed alpha
Helix 44	AE8	C	221	232	Right-handed alpha
Helix 45	AE9	C	233	238	Right-handed alpha
Helix 46	AF1	C	254	258	Right-handed 310
Helix 47	AF2	C	263	274	Right-handed alpha
Helix 48	AF3	C	286	302	Right-handed alpha
Helix 49	AF4	D	11	41	Right-handed alpha
Helix 50	AF5	D	42	46	Right-handed 310
Helix 51	AF6	D	52	66	Right-handed alpha
Helix 52	AF7	D	67	86	Right-handed alpha
Helix 53	AF8	D	91	113	Right-handed alpha
Helix 54	AF9	D	127	151	Right-handed alpha
Helix 55	AG1	D	158	179	Right-handed alpha
Helix 56	AG2	D	194	213	Right-handed alpha
Helix 57	AG3	D	215	231	Right-handed alpha
Helix 58	AG4	D	236	254	Right-handed alpha
Helix 59	AG5	D	255	259	Right-handed 310
Helix 60	AG6	D	265	279	Right-handed alpha
Helix 61	AG7	D	279	292	Right-handed alpha
Helix 62	AG8	D	293	295	Right-handed 310
Helix 63	AG9	D	296	298	Right-handed 310
Helix 64	AH1	D	299	304	Right-handed alpha
Helix 65	AH2	D	304	328	Right-handed alpha
Helix 66	AH3	D	329	337	Right-handed alpha
Helix 67	AH4	D	339	353	Right-handed alpha
Helix 68	AH5	D	353	370	Right-handed alpha
Helix 69	AH6	D	378	412	Right-handed alpha
Helix 70	AH7	D	422	430	Right-handed alpha
Helix 71	AH8	D	430	461	Right-handed alpha
Helix 72	AH9	E	10	22	Right-handed alpha
Helix 73	AI1	E	23	30	Right-handed alpha
Helix 74	AI2	E	30	36	Right-handed alpha
Helix 75	AI3	E	50	63	Right-handed alpha
Helix 76	AI4	E	64	68	Right-handed 310
Helix 77	AI5	E	76	84	Right-handed alpha
Helix 78	AI6	E	88	93	Right-handed 310
Helix 79	AI7	E	117	127	Right-handed alpha
Helix 80	AI8	E	127	132	Right-handed alpha
Helix 81	AI9	E	141	146	Right-handed alpha
Helix 82	AJ1	E	152	163	Right-handed alpha
Helix 83	AJ2	E	168	173	Right-handed alpha
Helix 84	AJ3	E	183	193	Right-handed alpha
Helix 85	AJ4	F	2	29	Right-handed alpha
Helix 86	AJ5	F	55	76	Right-handed alpha
Helix 87	AJ6	F	94	120	Right-handed alpha
Helix 88	AJ7	F	121	128	Right-handed alpha
Helix 89	AJ8	F	128	143	Right-handed alpha
Helix 90	AJ9	F	143	148	Right-handed alpha
Helix 91	AK1	F	170	181	Right-handed alpha
Helix 92	AK2	F	189	194	Right-handed alpha
Helix 93	AK3	F	194	208	Right-handed alpha
Helix 94	AK4	F	221	232	Right-handed alpha
Helix 95	AK5	F	233	238	Right-handed alpha
Helix 96	AK6	F	254	258	Right-handed 310
Helix 97	AK7	F	263	274	Right-handed alpha
Helix 98	AK8	F	286	302	Right-handed alpha
Helix 99	AK9	G	11	41	Right-handed alpha
Helix 100	AL1	G	42	46	Right-handed 310
Helix 101	AL2	G	52	66	Right-handed alpha
Helix 102	AL3	G	67	86	Right-handed alpha
Helix 103	AL4	G	91	113	Right-handed alpha
Helix 104	AL5	G	127	151	Right-handed alpha
Helix 105	AL6	G	158	179	Right-handed alpha
Helix 106	AL7	G	194	213	Right-handed alpha
Helix 107	AL8	G	215	231	Right-handed alpha
Helix 108	AL9	G	236	254	Right-handed alpha
Helix 109	AM1	G	255	259	Right-handed 310
Helix 110	AM2	G	265	279	Right-handed alpha
Helix 111	AM3	G	279	292	Right-handed alpha
Helix 112	AM4	G	293	295	Right-handed 310
Helix 113	AM5	G	296	298	Right-handed 310
Helix 114	AM6	G	299	304	Right-handed alpha
Helix 115	AM7	G	304	328	Right-handed alpha
Helix 116	AM8	G	329	337	Right-handed alpha
Helix 117	AM9	G	339	353	Right-handed alpha
Helix 118	AN1	G	353	370	Right-handed alpha
Helix 119	AN2	G	378	412	Right-handed alpha
Helix 120	AN3	G	422	430	Right-handed alpha
Helix 121	AN4	G	430	461	Right-handed alpha
Helix 122	AN5	H	10	22	Right-handed alpha
Helix 123	AN6	H	23	30	Right-handed alpha
Helix 124	AN7	H	30	36	Right-handed alpha
Helix 125	AN8	H	50	64	Right-handed alpha
Helix 126	AN9	H	65	68	Right-handed 310
Helix 127	AO1	H	76	84	Right-handed alpha
Helix 128	AO2	H	88	92	Right-handed 310
Helix 129	AO3	H	117	127	Right-handed alpha
Helix 130	AO4	H	127	132	Right-handed alpha
Helix 131	AO5	H	141	146	Right-handed alpha
Helix 132	AO6	H	152	163	Right-handed alpha
Helix 133	AO7	H	168	173	Right-handed alpha
Helix 134	AO8	H	183	193	Right-handed alpha
Helix 135	AO9	I	2	29	Right-handed alpha
Helix 136	AP1	I	55	76	Right-handed alpha
Helix 137	AP2	I	94	120	Right-handed alpha
Helix 138	AP3	I	121	128	Right-handed alpha
Helix 139	AP4	I	128	143	Right-handed alpha
Helix 140	AP5	I	143	148	Right-handed alpha
Helix 141	AP6	I	170	181	Right-handed alpha
Helix 142	AP7	I	189	194	Right-handed alpha
Helix 143	AP8	I	194	208	Right-handed alpha
Helix 144	AP9	I	221	232	Right-handed alpha
Helix 145	AQ1	I	233	238	Right-handed alpha
Helix 146	AQ2	I	254	258	Right-handed 310
Helix 147	AQ3	I	263	274	Right-handed alpha
Helix 148	AQ4	I	286	302	Right-handed alpha
Helix 149	AQ5	K	11	41	Right-handed alpha
Helix 150	AQ6	K	42	46	Right-handed 310
Helix 151	AQ7	K	52	66	Right-handed alpha
Helix 152	AQ8	K	67	86	Right-handed alpha
Helix 153	AQ9	K	91	113	Right-handed alpha
Helix 154	AR1	K	127	151	Right-handed alpha
Helix 155	AR2	K	158	179	Right-handed alpha
Helix 156	AR3	K	194	213	Right-handed alpha
Helix 157	AR4	K	215	231	Right-handed alpha
Helix 158	AR5	K	236	254	Right-handed alpha
Helix 159	AR6	K	255	258	Right-handed 310
Helix 160	AR7	K	265	279	Right-handed alpha
Helix 161	AR8	K	279	292	Right-handed alpha
Helix 162	AR9	K	293	295	Right-handed 310
Helix 163	AS1	K	299	304	Right-handed alpha
Helix 164	AS2	K	304	328	Right-handed alpha
Helix 165	AS3	K	329	337	Right-handed alpha
Helix 166	AS4	K	339	353	Right-handed alpha
Helix 167	AS5	K	353	370	Right-handed alpha
Helix 168	AS6	K	378	412	Right-handed alpha
Helix 169	AS7	K	422	430	Right-handed alpha
Helix 170	AS8	K	430	461	Right-handed alpha
Helix 171	AS9	L	10	22	Right-handed alpha
Helix 172	AT1	L	23	30	Right-handed alpha
Helix 173	AT2	L	30	36	Right-handed alpha
Helix 174	AT3	L	50	63	Right-handed alpha
Helix 175	AT4	L	64	68	Right-handed 310
Helix 176	AT5	L	76	84	Right-handed alpha
Helix 177	AT6	L	88	92	Right-handed 310
Helix 178	AT7	L	117	127	Right-handed alpha
Helix 179	AT8	L	127	132	Right-handed alpha
Helix 180	AT9	L	141	146	Right-handed alpha
Helix 181	AU1	L	152	163	Right-handed alpha
Helix 182	AU2	L	168	173	Right-handed alpha
Helix 183	AU3	L	183	193	Right-handed alpha
Helix 184	AU4	M	2	28	Right-handed alpha
Helix 185	AU5	M	55	76	Right-handed alpha
Helix 186	AU6	M	94	120	Right-handed alpha
Helix 187	AU7	M	121	128	Right-handed alpha
Helix 188	AU8	M	128	143	Right-handed alpha
Helix 189	AU9	M	143	148	Right-handed alpha
Helix 190	AV1	M	170	181	Right-handed alpha
Helix 191	AV2	M	189	194	Right-handed alpha
Helix 192	AV3	M	194	208	Right-handed alpha
Helix 193	AV4	M	221	232	Right-handed alpha
Helix 194	AV5	M	233	238	Right-handed alpha
Helix 195	AV6	M	254	258	Right-handed 310
Helix 196	AV7	M	263	274	Right-handed alpha
Helix 197	AV8	M	286	302	Right-handed alpha
Helix 198	AV9	N	4	29	Right-handed alpha
Helix 199	AW1	O	4	29	Right-handed alpha
Helix 200	AW2	P	4	29	Right-handed alpha
Helix 201	AW3	Q	4	29	Right-handed alpha

There are 9 sheets in PDB entry 5DJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	185	first strand
Strand 2	A	188	191	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	183	first strand
Strand 2	C	278	279	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	185	first strand
Strand 2	D	188	191	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	183	first strand
Strand 2	F	278	279	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	185	first strand
Strand 2	G	188	191	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	182	183	first strand
Strand 2	I	278	279	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	181	185	first strand
Strand 2	K	188	191	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	43	44	first strand
Strand 2	M	47	48	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	182	183	first strand
Strand 2	M	278	279	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DJQ