Analysis of interatomic Contacts of Structural Units in PDB entry:
5DJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DJS entry

There are 4 chains in PDB entry 5DJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 524
B
 MET 1ALA 524
C
 MET 1ALA 524
D
 MET 1ALA 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are111 helices in PDB entry 5DJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 22Right-handed alpha
Helix 2
AA2
A
24 39Right-handed alpha
Helix 3
AA3
A
42 57Right-handed alpha
Helix 4
AA4
A
58 73Right-handed alpha
Helix 5
AA5
A
76 90Right-handed alpha
Helix 6
AA6
A
92 107Right-handed alpha
Helix 7
AA7
A
110 121Right-handed alpha
Helix 8
AA8
A
122 124Right-handed 310
Helix 9
AA9
A
128 144Right-handed alpha
Helix 10
AB1
A
145 148Right-handed 310
Helix 11
AB2
A
175 188Right-handed alpha
Helix 12
AB3
A
205 215Right-handed alpha
Helix 13
AB4
A
225 237Right-handed alpha
Helix 14
AB5
A
245 249Right-handed 310
Helix 15
AB6
A
252 258Right-handed alpha
Helix 16
AB7
A
293 297Right-handed 310
Helix 17
AB8
A
338 342Right-handed 310
Helix 18
AB9
A
343 357Right-handed alpha
Helix 19
AC1
A
371 384Right-handed alpha
Helix 20
AC2
A
388 390Right-handed 310
Helix 21
AC3
A
399 406Right-handed alpha
Helix 22
AC4
A
407 410Right-handed 310
Helix 23
AC5
A
422 431Right-handed alpha
Helix 24
AC6
A
442 445Right-handed 310
Helix 25
AC7
A
446 455Right-handed alpha
Helix 26
AC8
A
457 459Right-handed 310
Helix 27
AC9
A
464 478Right-handed alpha
Helix 28
AD1
A
478 522Right-handed alpha
Helix 29
AD2
B
4 22Right-handed alpha
Helix 30
AD3
B
24 39Right-handed alpha
Helix 31
AD4
B
42 57Right-handed alpha
Helix 32
AD5
B
58 73Right-handed alpha
Helix 33
AD6
B
76 91Right-handed alpha
Helix 34
AD7
B
92 107Right-handed alpha
Helix 35
AD8
B
110 121Right-handed alpha
Helix 36
AD9
B
122 124Right-handed 310
Helix 37
AE1
B
128 144Right-handed alpha
Helix 38
AE2
B
145 148Right-handed 310
Helix 39
AE3
B
175 188Right-handed alpha
Helix 40
AE4
B
205 215Right-handed alpha
Helix 41
AE5
B
225 237Right-handed alpha
Helix 42
AE6
B
245 249Right-handed 310
Helix 43
AE7
B
252 258Right-handed alpha
Helix 44
AE8
B
293 297Right-handed 310
Helix 45
AE9
B
338 342Right-handed 310
Helix 46
AF1
B
343 357Right-handed alpha
Helix 47
AF2
B
371 384Right-handed alpha
Helix 48
AF3
B
388 390Right-handed 310
Helix 49
AF4
B
399 406Right-handed alpha
Helix 50
AF5
B
422 431Right-handed alpha
Helix 51
AF6
B
442 445Right-handed 310
Helix 52
AF7
B
446 455Right-handed alpha
Helix 53
AF8
B
457 459Right-handed 310
Helix 54
AF9
B
464 478Right-handed alpha
Helix 55
AG1
B
478 522Right-handed alpha
Helix 56
AG2
C
4 23Right-handed alpha
Helix 57
AG3
C
24 39Right-handed alpha
Helix 58
AG4
C
42 57Right-handed alpha
Helix 59
AG5
C
58 73Right-handed alpha
Helix 60
AG6
C
76 91Right-handed alpha
Helix 61
AG7
C
92 107Right-handed alpha
Helix 62
AG8
C
110 121Right-handed alpha
Helix 63
AG9
C
122 124Right-handed 310
Helix 64
AH1
C
128 144Right-handed alpha
Helix 65
AH2
C
145 148Right-handed 310
Helix 66
AH3
C
175 188Right-handed alpha
Helix 67
AH4
C
205 215Right-handed alpha
Helix 68
AH5
C
225 237Right-handed alpha
Helix 69
AH6
C
245 249Right-handed 310
Helix 70
AH7
C
252 258Right-handed alpha
Helix 71
AH8
C
293 297Right-handed 310
Helix 72
AH9
C
338 342Right-handed 310
Helix 73
AI1
C
343 357Right-handed alpha
Helix 74
AI2
C
371 384Right-handed alpha
Helix 75
AI3
C
388 390Right-handed 310
Helix 76
AI4
C
399 406Right-handed alpha
Helix 77
AI5
C
407 410Right-handed 310
Helix 78
AI6
C
422 431Right-handed alpha
Helix 79
AI7
C
442 445Right-handed 310
Helix 80
AI8
C
446 455Right-handed alpha
Helix 81
AI9
C
457 459Right-handed 310
Helix 82
AJ1
C
464 478Right-handed alpha
Helix 83
AJ2
C
478 522Right-handed alpha
Helix 84
AJ3
D
4 23Right-handed alpha
Helix 85
AJ4
D
24 39Right-handed alpha
Helix 86
AJ5
D
42 57Right-handed alpha
Helix 87
AJ6
D
58 73Right-handed alpha
Helix 88
AJ7
D
76 91Right-handed alpha
Helix 89
AJ8
D
92 107Right-handed alpha
Helix 90
AJ9
D
110 121Right-handed alpha
Helix 91
AK1
D
122 124Right-handed 310
Helix 92
AK2
D
128 144Right-handed alpha
Helix 93
AK3
D
145 148Right-handed 310
Helix 94
AK4
D
175 188Right-handed alpha
Helix 95
AK5
D
205 215Right-handed alpha
Helix 96
AK6
D
225 237Right-handed alpha
Helix 97
AK7
D
245 249Right-handed 310
Helix 98
AK8
D
252 258Right-handed alpha
Helix 99
AK9
D
293 297Right-handed 310
Helix 100
AL1
D
338 342Right-handed 310
Helix 101
AL2
D
343 357Right-handed alpha
Helix 102
AL3
D
371 384Right-handed alpha
Helix 103
AL4
D
388 390Right-handed 310
Helix 104
AL5
D
399 406Right-handed alpha
Helix 105
AL6
D
407 410Right-handed 310
Helix 106
AL7
D
422 431Right-handed alpha
Helix 107
AL8
D
442 445Right-handed 310
Helix 108
AL9
D
446 455Right-handed alpha
Helix 109
AM1
D
457 459Right-handed 310
Helix 110
AM2
D
464 478Right-handed alpha
Helix 111
AM3
D
478 522Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5DJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 199first strand
Strand 2
A
163 169parallel
Strand 3
A
240 243parallel
Strand 4
A
263 266parallel
Strand 5
A
281 285parallel
Strand 6
A
300 304parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
361 365parallel
Strand 3
A
332 335parallel
Strand 4
A
412 414parallel
Strand 5
A
435 438parallel
Strand 6
A
461 462parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 199first strand
Strand 2
B
163 169parallel
Strand 3
B
240 243parallel
Strand 4
B
263 266parallel
Strand 5
B
281 285parallel
Strand 6
B
300 304parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 395first strand
Strand 2
B
361 365parallel
Strand 3
B
332 335parallel
Strand 4
B
412 414parallel
Strand 5
B
435 438parallel
Strand 6
B
461 462parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 199first strand
Strand 2
C
163 169parallel
Strand 3
C
240 243parallel
Strand 4
C
263 266parallel
Strand 5
C
281 285parallel
Strand 6
C
300 304parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
392 395first strand
Strand 2
C
361 365parallel
Strand 3
C
332 335parallel
Strand 4
C
412 414parallel
Strand 5
C
435 438parallel
Strand 6
C
461 462parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
193 199first strand
Strand 2
D
163 169parallel
Strand 3
D
240 243parallel
Strand 4
D
263 266parallel
Strand 5
D
281 285parallel
Strand 6
D
300 304parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
392 395first strand
Strand 2
D
361 365parallel
Strand 3
D
332 335parallel
Strand 4
D
412 414parallel
Strand 5
D
435 438parallel
Strand 6
D
461 462parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il