Analysis of interatomic Contacts of Structural Units in PDB entry:
5DJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DJW entry

There are 2 chains in PDB entry 5DJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 46	ASP 657
B	VAL 58	ILE 664

There are 27 helices in PDB entry 5DJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	154	166	Right-handed alpha
Helix 2	AA2	A	172	177	Right-handed 310
Helix 3	AA3	A	193	202	Right-handed alpha
Helix 4	AA4	A	235	241	Right-handed alpha
Helix 5	AA5	A	296	304	Right-handed alpha
Helix 6	AA6	A	306	310	Right-handed 310
Helix 7	AA7	A	355	357	Right-handed 310
Helix 8	AA8	A	358	375	Right-handed alpha
Helix 9	AA9	A	390	394	Right-handed 310
Helix 10	AB1	A	406	422	Right-handed alpha
Helix 11	AB2	A	439	451	Right-handed alpha
Helix 12	AB3	A	473	490	Right-handed alpha
Helix 13	AB4	A	490	501	Right-handed alpha
Helix 14	AB5	A	511	515	Right-handed 310
Helix 15	AB6	A	586	590	Right-handed 310
Helix 16	AB7	B	153	166	Right-handed alpha
Helix 17	AB8	B	193	201	Right-handed alpha
Helix 18	AB9	B	230	241	Right-handed alpha
Helix 19	AC1	B	296	305	Right-handed alpha
Helix 20	AC2	B	307	313	Right-handed alpha
Helix 21	AC3	B	358	375	Right-handed alpha
Helix 22	AC4	B	390	394	Right-handed 310
Helix 23	AC5	B	405	422	Right-handed alpha
Helix 24	AC6	B	439	451	Right-handed alpha
Helix 25	AC7	B	474	490	Right-handed alpha
Helix 26	AC8	B	490	501	Right-handed alpha
Helix 27	AC9	B	511	515	Right-handed 310

There are 14 sheets in PDB entry 5DJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	108	109	anti-parallel
Strand 3	A	115	121	anti-parallel
Strand 4	A	145	151	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	128	129	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	207	210	parallel
Strand 3	A	244	249	parallel
Strand 4	A	317	320	parallel
Strand 5	A	382	384	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	254	first strand
Strand 2	A	289	290	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	510	first strand
Strand 2	A	529	531	anti-parallel
Strand 3	A	535	538	anti-parallel
Strand 4	A	569	572	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	580	first strand
Strand 2	A	596	600	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	614	first strand
Strand 2	A	626	635	anti-parallel
Strand 3	A	640	650	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	105	108	anti-parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	146	150	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	457	458	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	249	first strand
Strand 2	B	318	320	parallel
Strand 3	B	382	384	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	287	288	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	510	first strand
Strand 2	B	529	531	anti-parallel
Strand 3	B	535	538	anti-parallel
Strand 4	B	569	572	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	579	first strand
Strand 2	B	597	600	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	613	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	641	644	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DJW