Analysis of interatomic Contacts of Structural Units in PDB entry:
5DK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DK1 entry

There is 1 chain in PDB entry 5DK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1ARG 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5DK1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
40 45Right-handed alpha
Helix 3
AA3
A
48 51Right-handed 310
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
110 114Right-handed 310
Helix 6
AA6
A
146 154Right-handed alpha
Helix 7
AA7
A
214 224Right-handed alpha
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There are 3 sheets in PDB entry 5DK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
182 185anti-parallel
Strand 5
A
188 195anti-parallel
Strand 6
A
104 105parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
182 185anti-parallel
Strand 5
A
188 195anti-parallel
Strand 6
A
206 210anti-parallel
Strand 7
A
162 165anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
25 33anti-parallel
Strand 3
A
36 39anti-parallel
Strand 4
A
90 94anti-parallel
Strand 5
A
67 76anti-parallel
Strand 6
A
53 56anti-parallel
Strand 7
A
15 19anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il