Analysis of interatomic Contacts of Structural Units in PDB entry:
5DK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DK5 entry

There are 2 chains in PDB entry 5DK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 5TYR 298
B
 GLN 4TYR 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5DK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 73Right-handed alpha
Helix 2
AA2
A
75 81Right-handed alpha
Helix 3
AA3
A
84 99Right-handed alpha
Helix 4
AA4
A
113 118Right-handed alpha
Helix 5
AA5
A
118 128Right-handed alpha
Helix 6
AA6
A
132 135Right-handed 310
Helix 7
AA7
A
141 148Right-handed alpha
Helix 8
AA8
A
148 153Right-handed alpha
Helix 9
AA9
A
161 170Right-handed alpha
Helix 10
AB1
A
180 198Right-handed alpha
Helix 11
AB2
A
212 216Right-handed 310
Helix 12
AB3
A
224 227Right-handed 310
Helix 13
AB4
A
228 240Right-handed alpha
Helix 14
AB5
A
253 257Right-handed 310
Helix 15
AB6
A
278 283Right-handed 310
Helix 16
AB7
A
289 296Right-handed alpha
Helix 17
AB8
B
65 73Right-handed alpha
Helix 18
AB9
B
75 81Right-handed alpha
Helix 19
AC1
B
84 100Right-handed alpha
Helix 20
AC2
B
113 118Right-handed alpha
Helix 21
AC3
B
118 127Right-handed alpha
Helix 22
AC4
B
132 135Right-handed 310
Helix 23
AC5
B
141 152Right-handed alpha
Helix 24
AC6
B
161 170Right-handed alpha
Helix 25
AC7
B
180 198Right-handed alpha
Helix 26
AC8
B
212 216Right-handed 310
Helix 27
AC9
B
224 227Right-handed 310
Helix 28
AD1
B
228 240Right-handed alpha
Helix 29
AD2
B
253 257Right-handed 310
Helix 30
AD3
B
278 282Right-handed 310
Helix 31
AD4
B
289 296Right-handed alpha
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There are 2 sheets in PDB entry 5DK5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 55first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
10 18anti-parallel
Strand 4
A
106 110parallel
Strand 5
A
137 140parallel
Strand 6
A
206 209anti-parallel
Strand 7
A
243 246anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 55first strand
Strand 2
B
31 40anti-parallel
Strand 3
B
10 18anti-parallel
Strand 4
B
106 110parallel
Strand 5
B
137 140parallel
Strand 6
B
206 209anti-parallel
Strand 7
B
243 246anti-parallel
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