Analysis of interatomic Contacts of Structural Units in PDB entry:
5DK6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DK6 entry

There is 1 chain in PDB entry 5DK6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -5SER 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5DK6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 19Right-handed alpha
Helix 2
AA2
A
51 67Right-handed alpha
Helix 3
AA3
A
102 106Right-handed 310
Helix 4
AA4
A
122 133Right-handed alpha
Helix 5
AA5
A
160 171Right-handed alpha
Helix 6
AA6
A
180 191Right-handed alpha
Helix 7
AA7
A
208 235Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5DK6.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 28first strand
Strand 2
A
31 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
3 7parallel
Strand 5
A
70 79parallel
Strand 6
A
195 204parallel
Strand 7
A
89 97anti-parallel
Strand 8
A
146 153parallel
Strand 9
A
174 178parallel
Strand 10
A
70 79anti-parallel
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