Analysis of interatomic Contacts of Structural Units in PDB entry:
5DKH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DKH entry

There are 3 chains in PDB entry 5DKH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1377GLU 1492
B
 PRO 1381LYS 1490
C
 PRO 1380GLU 1492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5DKH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1380 1397Right-handed alpha
Helix 2
AA2
A
1406 1410Right-handed 310
Helix 3
AA3
A
1418 1425Right-handed alpha
Helix 4
AA4
A
1430 1440Right-handed alpha
Helix 5
AA5
A
1445 1464Right-handed alpha
Helix 6
AA6
A
1468 1490Right-handed alpha
Helix 7
AA7
B
1382 1397Right-handed alpha
Helix 8
AA8
B
1406 1410Right-handed 310
Helix 9
AA9
B
1418 1425Right-handed alpha
Helix 10
AB1
B
1430 1440Right-handed alpha
Helix 11
AB2
B
1445 1464Right-handed alpha
Helix 12
AB3
B
1468 1490Right-handed alpha
Helix 13
AB4
C
1381 1397Right-handed alpha
Helix 14
AB5
C
1406 1410Right-handed 310
Helix 15
AB6
C
1418 1425Right-handed alpha
Helix 16
AB7
C
1430 1440Right-handed alpha
Helix 17
AB8
C
1445 1464Right-handed alpha
Helix 18
AB9
C
1468 1490Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5DKH
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il