Analysis of interatomic Contacts of Structural Units in PDB entry:
5DKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DKK entry

There are 2 chains in PDB entry 5DKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 239ALA 372
B
 SER 240ASP 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5DKK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 248Right-handed alpha
Helix 2
AA2
A
268 276Right-handed alpha
Helix 3
AA3
A
278 283Right-handed alpha
Helix 4
AA4
A
286 291Right-handed 310
Helix 5
AA5
A
296 310Right-handed alpha
Helix 6
AA6
A
354 372Right-handed alpha
Helix 7
AA7
B
241 248Right-handed alpha
Helix 8
AA8
B
268 276Right-handed alpha
Helix 9
AA9
B
278 283Right-handed alpha
Helix 10
AB1
B
286 291Right-handed 310
Helix 11
AB2
B
296 310Right-handed alpha
Helix 12
AB3
B
354 374Right-handed alpha
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There are 2 sheets in PDB entry 5DKK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
251 255anti-parallel
Strand 3
A
343 353anti-parallel
Strand 4
A
326 337anti-parallel
Strand 5
A
313 320anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
251 255anti-parallel
Strand 3
B
343 353anti-parallel
Strand 4
B
326 337anti-parallel
Strand 5
B
313 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il