Analysis of interatomic Contacts of Structural Units in PDB entry:
5DKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DKT entry

There is 1 chain in PDB entry 5DKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1SER 626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5DKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed 310
Helix 2
AA2
A
66 73Right-handed 310
Helix 3
AA3
A
89 93Right-handed 310
Helix 4
AA4
A
117 130Right-handed alpha
Helix 5
AA5
A
139 150Right-handed alpha
Helix 6
AA6
A
160 168Right-handed alpha
Helix 7
AA7
A
177 186Right-handed alpha
Helix 8
AA8
A
205 233Right-handed alpha
Helix 9
AA9
A
235 256Right-handed alpha
Helix 10
AB1
A
260 281Right-handed alpha
Helix 11
AB2
A
332 347Right-handed alpha
Helix 12
AB3
A
352 356Right-handed 310
Helix 13
AB4
A
391 396Right-handed alpha
Helix 14
AB5
A
413 424Right-handed alpha
Helix 15
AB6
A
425 434Right-handed alpha
Helix 16
AB7
A
437 448Right-handed alpha
Helix 17
AB8
A
455 470Right-handed alpha
Helix 18
AB9
A
474 486Right-handed alpha
Helix 19
AC1
A
491 506Right-handed alpha
Helix 20
AC2
A
506 520Right-handed alpha
Helix 21
AC3
A
538 566Right-handed alpha
Helix 22
AC4
A
589 609Right-handed alpha
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There are 6 sheets in PDB entry 5DKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 27first strand
Strand 2
A
37 45anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
107 111parallel
Strand 3
A
95 101anti-parallel
Strand 4
A
78 85anti-parallel
Strand 5
A
134 137parallel
Strand 6
A
157 159parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
257 259anti-parallel
Strand 3
A
398 399anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
379 381anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 577first strand
Strand 2
A
580 586anti-parallel
Strand 3
A
404 412anti-parallel
Strand 4
A
615 621anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
A
532 533anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il