Analysis of interatomic Contacts of Structural Units in PDB entry:
5DKV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DKV entry

There are 3 chains in PDB entry 5DKV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 27	GLU 329
B	ASN 30	GLU 329
C	LYS 32	ALA 110

There are 42 helices in PDB entry 5DKV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	62	Right-handed alpha
Helix 2	AA2	A	74	87	Right-handed alpha
Helix 3	AA3	A	103	113	Right-handed alpha
Helix 4	AA4	A	146	162	Right-handed alpha
Helix 5	AA5	A	177	192	Right-handed alpha
Helix 6	AA6	A	208	223	Right-handed alpha
Helix 7	AA7	A	233	247	Right-handed alpha
Helix 8	AA8	A	263	270	Right-handed alpha
Helix 9	AA9	A	280	297	Right-handed alpha
Helix 10	AB1	A	315	318	Right-handed 310
Helix 11	AB2	A	319	324	Right-handed alpha
Helix 12	AB3	B	44	62	Right-handed alpha
Helix 13	AB4	B	74	88	Right-handed alpha
Helix 14	AB5	B	103	113	Right-handed alpha
Helix 15	AB6	B	146	162	Right-handed alpha
Helix 16	AB7	B	177	192	Right-handed alpha
Helix 17	AB8	B	208	223	Right-handed alpha
Helix 18	AB9	B	233	247	Right-handed alpha
Helix 19	AC1	B	263	270	Right-handed alpha
Helix 20	AC2	B	280	297	Right-handed alpha
Helix 21	AC3	B	315	318	Right-handed 310
Helix 22	AC4	B	319	324	Right-handed alpha
Helix 23	AC5	C	44	62	Right-handed alpha
Helix 24	AC6	C	74	88	Right-handed alpha
Helix 25	AC7	C	103	113	Right-handed alpha
Helix 26	AC8	C	146	162	Right-handed alpha
Helix 27	AC9	C	177	192	Right-handed alpha
Helix 28	AD1	C	208	223	Right-handed alpha
Helix 29	AD2	C	233	247	Right-handed alpha
Helix 30	AD3	C	263	270	Right-handed alpha
Helix 31	AD4	C	280	297	Right-handed alpha
Helix 32	AD5	C	319	324	Right-handed alpha
Helix 33	AD6	D	44	62	Right-handed alpha
Helix 34	AD7	D	74	88	Right-handed alpha
Helix 35	AD8	D	103	113	Right-handed alpha
Helix 36	AD9	D	146	162	Right-handed alpha
Helix 37	AE1	D	177	192	Right-handed alpha
Helix 38	AE2	D	208	223	Right-handed alpha
Helix 39	AE3	D	233	247	Right-handed alpha
Helix 40	AE4	D	263	270	Right-handed alpha
Helix 41	AE5	D	280	297	Right-handed alpha
Helix 42	AE6	D	319	324	Right-handed alpha

There are 12 sheets in PDB entry 5DKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	67	first strand
Strand 2	A	34	38	parallel
Strand 3	A	92	95	parallel
Strand 4	A	117	120	parallel
Strand 5	A	142	145	parallel
Strand 6	A	304	307	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	166	172	parallel
Strand 3	A	203	204	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	166	172	parallel
Strand 3	A	228	231	parallel
Strand 4	A	254	258	parallel
Strand 5	A	275	278	parallel
Strand 6	A	310	312	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	67	first strand
Strand 2	B	34	38	parallel
Strand 3	B	92	95	parallel
Strand 4	B	117	120	parallel
Strand 5	B	142	145	parallel
Strand 6	B	304	307	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	166	172	parallel
Strand 3	B	203	204	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	166	172	parallel
Strand 3	B	228	231	parallel
Strand 4	B	254	258	parallel
Strand 5	B	275	278	parallel
Strand 6	B	310	312	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	67	first strand
Strand 2	C	34	38	parallel
Strand 3	C	92	95	parallel
Strand 4	C	117	120	parallel
Strand 5	C	142	145	parallel
Strand 6	C	304	307	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	199	first strand
Strand 2	C	166	172	parallel
Strand 3	C	203	204	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	199	first strand
Strand 2	C	166	172	parallel
Strand 3	C	226	231	parallel
Strand 4	C	254	258	parallel
Strand 5	C	275	278	parallel
Strand 6	C	310	313	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	67	first strand
Strand 2	D	34	38	parallel
Strand 3	D	92	95	parallel
Strand 4	D	117	120	parallel
Strand 5	D	142	145	parallel
Strand 6	D	304	307	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	166	172	parallel
Strand 3	D	203	204	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	166	172	parallel
Strand 3	D	226	231	parallel
Strand 4	D	254	258	parallel
Strand 5	D	275	278	parallel
Strand 6	D	310	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DKV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DKV