Analysis of interatomic Contacts of Structural Units in PDB entry:
5DL2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DL2 entry

There are 2 chains in PDB entry 5DL2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 58SER 280
B
 ASP 58SER 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5DL2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 66Right-handed 310
Helix 2
AA2
A
69 83Right-handed alpha
Helix 3
AA3
A
87 100Right-handed alpha
Helix 4
AA4
A
103 121Right-handed alpha
Helix 5
AA5
A
125 138Right-handed alpha
Helix 6
AA6
A
143 154Right-handed alpha
Helix 7
AA7
A
158 170Right-handed alpha
Helix 8
AA8
A
173 179Right-handed alpha
Helix 9
AA9
A
181 183Right-handed 310
Helix 10
AB1
A
184 199Right-handed alpha
Helix 11
AB2
A
202 216Right-handed alpha
Helix 12
AB3
A
222 241Right-handed alpha
Helix 13
AB4
A
244 259Right-handed alpha
Helix 14
AB5
A
261 279Right-handed alpha
Helix 15
AB6
B
62 66Right-handed 310
Helix 16
AB7
B
67 68Right-handed 310
Helix 17
AB8
B
69 83Right-handed alpha
Helix 18
AB9
B
87 100Right-handed alpha
Helix 19
AC1
B
103 121Right-handed alpha
Helix 20
AC2
B
125 138Right-handed alpha
Helix 21
AC3
B
143 154Right-handed alpha
Helix 22
AC4
B
158 170Right-handed alpha
Helix 23
AC5
B
173 179Right-handed alpha
Helix 24
AC6
B
181 183Right-handed 310
Helix 25
AC7
B
184 199Right-handed alpha
Helix 26
AC8
B
202 216Right-handed alpha
Helix 27
AC9
B
222 241Right-handed alpha
Helix 28
AD1
B
244 259Right-handed alpha
Helix 29
AD2
B
261 279Right-handed alpha
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There are no sheets in PDB entry 5DL2
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il