Analysis of interatomic Contacts of Structural Units in PDB entry:
5DL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DL5 entry

There is 1 chain in PDB entry 5DL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 0PHE 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 5DL5. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
247 252Right-handed alpha
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There are 2 sheets in PDB entry 5DL5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 28first strand
Strand 2
A
35 47anti-parallel
Strand 3
A
55 68anti-parallel
Strand 4
A
91 103anti-parallel
Strand 5
A
106 113anti-parallel
Strand 6
A
131 142anti-parallel
Strand 7
A
145 156anti-parallel
Strand 8
A
175 185anti-parallel
Strand 9
A
188 197anti-parallel
Strand 10
A
201 214anti-parallel
Strand 11
A
218 231anti-parallel
Strand 12
A
258 271anti-parallel
Strand 13
A
274 285anti-parallel
Strand 14
A
317 326anti-parallel
Strand 15
A
336 350anti-parallel
Strand 16
A
354 369anti-parallel
Strand 17
A
379 389anti-parallel
Strand 18
A
401 415anti-parallel
Strand 19
A
14 28anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
120 121anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il