Analysis of interatomic Contacts of Structural Units in PDB entry:
5DL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DL8 entry

There are 2 chains in PDB entry 5DL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 2PHE 392
A
 ASN 2PHE 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5DL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
356 360Right-handed 310
Helix 2
AA2
A
356 360Right-handed 310
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There are 6 sheets in PDB entry 5DL8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 54first strand
Strand 2
B
57 72anti-parallel
Strand 3
B
96 108anti-parallel
Strand 4
B
111 118anti-parallel
Strand 5
B
136 145anti-parallel
Strand 6
B
150 161anti-parallel
Strand 7
B
185 195anti-parallel
Strand 8
B
198 207anti-parallel
Strand 9
B
211 223anti-parallel
Strand 10
B
228 240anti-parallel
Strand 11
B
248 260anti-parallel
Strand 12
B
263 273anti-parallel
Strand 13
B
304 313anti-parallel
Strand 14
B
321 334anti-parallel
Strand 15
B
340 353anti-parallel
Strand 16
B
362 373anti-parallel
Strand 17
B
379 392anti-parallel
Strand 18
B
10 24anti-parallel
Strand 19
B
32 44anti-parallel
Strand 20
B
57 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
92 93anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 175first strand
Strand 2
B
178 181anti-parallel
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There are 20 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 54first strand
Strand 2
A
57 72anti-parallel
Strand 3
A
96 108anti-parallel
Strand 4
A
111 118anti-parallel
Strand 5
A
136 145anti-parallel
Strand 6
A
150 161anti-parallel
Strand 7
A
185 193anti-parallel
Strand 8
A
198 207anti-parallel
Strand 9
A
211 223anti-parallel
Strand 10
A
228 240anti-parallel
Strand 11
A
248 260anti-parallel
Strand 12
A
263 273anti-parallel
Strand 13
A
304 313anti-parallel
Strand 14
A
321 334anti-parallel
Strand 15
A
340 353anti-parallel
Strand 16
A
362 373anti-parallel
Strand 17
A
379 391anti-parallel
Strand 18
A
10 24anti-parallel
Strand 19
A
32 44anti-parallel
Strand 20
A
57 72anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
92 93anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
178 181anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il