Analysis of interatomic Contacts of Structural Units in PDB entry:
5DLE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DLE entry

There are 4 chains in PDB entry 5DLE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 162PHE 265
B
 LYS 162PHE 265
C
 LYS 162PHE 265
D
 LYS 162PHE 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5DLE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
176 193Right-handed alpha
Helix 2
AA2
A
212 219Right-handed alpha
Helix 3
AA3
A
232 236Right-handed 310
Helix 4
AA4
A
244 251Right-handed alpha
Helix 5
AA5
A
251 260Right-handed alpha
Helix 6
AA6
B
176 193Right-handed alpha
Helix 7
AA7
B
212 219Right-handed alpha
Helix 8
AA8
B
232 236Right-handed 310
Helix 9
AA9
B
244 251Right-handed alpha
Helix 10
AB1
B
251 260Right-handed alpha
Helix 11
AB2
C
176 193Right-handed alpha
Helix 12
AB3
C
212 219Right-handed alpha
Helix 13
AB4
C
232 236Right-handed 310
Helix 14
AB5
C
244 251Right-handed alpha
Helix 15
AB6
C
251 260Right-handed alpha
Helix 16
AB7
D
176 193Right-handed alpha
Helix 17
AB8
D
212 219Right-handed alpha
Helix 18
AB9
D
232 236Right-handed 310
Helix 19
AC1
D
244 251Right-handed alpha
Helix 20
AC2
D
251 260Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5DLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
196 202anti-parallel
Strand 3
A
165 171parallel
Strand 4
A
221 226parallel
Strand 5
A
240 243parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
196 203anti-parallel
Strand 3
B
165 171parallel
Strand 4
B
221 226parallel
Strand 5
B
240 243parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 208first strand
Strand 2
C
196 203anti-parallel
Strand 3
C
165 171parallel
Strand 4
C
221 226parallel
Strand 5
C
240 243parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
206 208first strand
Strand 2
D
196 203anti-parallel
Strand 3
D
165 171parallel
Strand 4
D
221 226parallel
Strand 5
D
240 243parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il