Analysis of interatomic Contacts of Structural Units in PDB entry:
5DLJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DLJ entry

There are 6 chains in PDB entry 5DLJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	VAL 15	ALA 281
C	THR 2	ALA 281
A	VAL 15	ALA 281
B	THR 2	ALA 281
G	T 1	T 39
H	T 1	T 39

There are 53 helices in PDB entry 5DLJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	62	72	Right-handed alpha
Helix 2	AA2	D	80	83	Right-handed 310
Helix 3	AA3	D	95	108	Right-handed alpha
Helix 4	AA4	D	108	125	Right-handed alpha
Helix 5	AA5	D	133	157	Right-handed alpha
Helix 6	AA6	D	174	199	Right-handed alpha
Helix 7	AA7	D	213	224	Right-handed alpha
Helix 8	AA8	D	227	239	Right-handed alpha
Helix 9	AA9	D	242	259	Right-handed alpha
Helix 10	AB1	D	259	274	Right-handed alpha
Helix 11	AB2	C	10	14	Right-handed 310
Helix 12	AB3	C	45	47	Right-handed 310
Helix 13	AB4	C	62	72	Right-handed alpha
Helix 14	AB5	C	80	82	Right-handed 310
Helix 15	AB6	C	90	94	Right-handed 310
Helix 16	AB7	C	95	108	Right-handed alpha
Helix 17	AB8	C	108	125	Right-handed alpha
Helix 18	AB9	C	133	157	Right-handed alpha
Helix 19	AC1	C	169	173	Right-handed 310
Helix 20	AC2	C	174	198	Right-handed alpha
Helix 21	AC3	C	213	224	Right-handed alpha
Helix 22	AC4	C	227	238	Right-handed alpha
Helix 23	AC5	C	242	259	Right-handed alpha
Helix 24	AC6	C	259	274	Right-handed alpha
Helix 25	AC7	A	62	72	Right-handed alpha
Helix 26	AC8	A	80	83	Right-handed 310
Helix 27	AC9	A	95	108	Right-handed alpha
Helix 28	AD1	A	108	125	Right-handed alpha
Helix 29	AD2	A	133	157	Right-handed alpha
Helix 30	AD3	A	169	173	Right-handed 310
Helix 31	AD4	A	174	199	Right-handed alpha
Helix 32	AD5	A	213	224	Right-handed alpha
Helix 33	AD6	A	227	239	Right-handed alpha
Helix 34	AD7	A	242	259	Right-handed alpha
Helix 35	AD8	A	259	274	Right-handed alpha
Helix 36	AD9	B	10	14	Right-handed 310
Helix 37	AE1	B	45	47	Right-handed 310
Helix 38	AE2	B	62	72	Right-handed alpha
Helix 39	AE3	B	80	82	Right-handed 310
Helix 40	AE4	B	90	94	Right-handed 310
Helix 41	AE5	B	95	108	Right-handed alpha
Helix 42	AE6	B	108	125	Right-handed alpha
Helix 43	AE7	B	133	157	Right-handed alpha
Helix 44	AE8	B	169	173	Right-handed 310
Helix 45	AE9	B	174	198	Right-handed alpha
Helix 46	AF1	B	213	224	Right-handed alpha
Helix 47	AF2	B	227	238	Right-handed alpha
Helix 48	AF3	B	242	258	Right-handed alpha
Helix 49	AF4	B	259	274	Right-handed alpha
Helix 50	AF5	F	12	21	Right-handed alpha
Helix 51	AF6	F	36	51	Right-handed alpha
Helix 52	AF7	E	12	21	Right-handed alpha
Helix 53	AF8	E	36	51	Right-handed alpha

There are 6 sheets in PDB entry 5DLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	51	54	parallel
Strand 3	D	74	78	parallel
Strand 4	D	85	89	anti-parallel
Strand 5	C	84	89	anti-parallel
Strand 6	C	74	78	anti-parallel
Strand 7	C	49	54	parallel
Strand 8	C	15	20	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	31	36	anti-parallel
Strand 3	D	23	28	anti-parallel
Strand 4	D	58	61	parallel
Strand 5	C	58	61	anti-parallel
Strand 6	C	23	28	parallel
Strand 7	C	31	35	anti-parallel
Strand 8	C	41	43	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	51	54	parallel
Strand 3	A	74	78	parallel
Strand 4	A	85	89	anti-parallel
Strand 5	B	84	89	anti-parallel
Strand 6	B	74	78	anti-parallel
Strand 7	B	49	54	parallel
Strand 8	B	15	20	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	44	first strand
Strand 2	A	31	36	anti-parallel
Strand 3	A	23	28	anti-parallel
Strand 4	A	58	61	parallel
Strand 5	B	58	61	anti-parallel
Strand 6	B	23	28	parallel
Strand 7	B	31	35	anti-parallel
Strand 8	B	41	43	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	27	first strand
Strand 2	F	30	35	anti-parallel
Strand 3	F	2	9	anti-parallel
Strand 4	F	55	61	anti-parallel
Strand 5	F	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	27	first strand
Strand 2	E	30	35	anti-parallel
Strand 3	E	2	9	anti-parallel
Strand 4	E	55	61	anti-parallel
Strand 5	E	68	73	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DLJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DLJ