Analysis of interatomic Contacts of Structural Units in PDB entry:
5DLL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DLL entry

There is 1 chain in PDB entry 5DLL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 11SER 864
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5DLL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 18Right-handed 310
Helix 2
AA2
A
79 83Right-handed 310
Helix 3
AA3
A
194 196Right-handed 310
Helix 4
AA4
A
228 231Right-handed 310
Helix 5
AA5
A
232 251Right-handed alpha
Helix 6
AA6
A
283 285Right-handed 310
Helix 7
AA7
A
293 310Right-handed alpha
Helix 8
AA8
A
321 323Right-handed 310
Helix 9
AA9
A
324 344Right-handed alpha
Helix 10
AB1
A
345 367Right-handed alpha
Helix 11
AB2
A
380 384Right-handed 310
Helix 12
AB3
A
386 421Right-handed alpha
Helix 13
AB4
A
426 437Right-handed alpha
Helix 14
AB5
A
446 451Right-handed alpha
Helix 15
AB6
A
548 559Right-handed alpha
Helix 16
AB7
A
561 579Right-handed alpha
Helix 17
AB8
A
584 596Right-handed alpha
Helix 18
AB9
A
601 610Right-handed alpha
Helix 19
AC1
A
613 619Right-handed alpha
Helix 20
AC2
A
625 644Right-handed alpha
Helix 21
AC3
A
644 656Right-handed alpha
Helix 22
AC4
A
664 683Right-handed alpha
Helix 23
AC5
A
687 701Right-handed alpha
Helix 24
AC6
A
703 715Right-handed alpha
Helix 25
AC7
A
719 734Right-handed alpha
Helix 26
AC8
A
737 750Right-handed alpha
Helix 27
AC9
A
755 765Right-handed alpha
Helix 28
AD1
A
773 786Right-handed alpha
Helix 29
AD2
A
787 792Right-handed alpha
Helix 30
AD3
A
796 813Right-handed alpha
Helix 31
AD4
A
813 822Right-handed alpha
Helix 32
AD5
A
823 825Right-handed 310
Helix 33
AD6
A
826 830Right-handed 310
Helix 34
AD7
A
831 847Right-handed alpha
Helix 35
AD8
A
851 864Right-handed alpha
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There are 8 sheets in PDB entry 5DLL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
377 378anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
67 73anti-parallel
Strand 3
A
98 107anti-parallel
Strand 4
A
39 49anti-parallel
Strand 5
A
23 33anti-parallel
Strand 6
A
147 157parallel
Strand 7
A
180 192anti-parallel
Strand 8
A
169 176anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
89 92anti-parallel
Strand 3
A
84 85anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
198 201anti-parallel
Strand 4
A
163 166anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 211first strand
Strand 2
A
217 224anti-parallel
Strand 3
A
258 264parallel
Strand 4
A
277 281parallel
Strand 5
A
271 272anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
424 425parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 522first strand
Strand 2
A
469 477anti-parallel
Strand 3
A
456 464anti-parallel
Strand 4
A
542 544parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 513first strand
Strand 2
A
492 499anti-parallel
Strand 3
A
530 532anti-parallel
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