Analysis of interatomic Contacts of Structural Units in PDB entry:
5DLQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DLQ entry

There are 4 chains in PDB entry 5DLQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 4	LEU 1148
C	PRO 7	MET 179
F	SER 15	GLY 49
F	HIS 51	GLU 70

There are137 helices in PDB entry 5DLQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	23	Right-handed alpha
Helix 2	AA2	B	25	29	Right-handed 310
Helix 3	AA3	B	30	46	Right-handed alpha
Helix 4	AA4	B	50	61	Right-handed alpha
Helix 5	AA5	B	63	81	Right-handed alpha
Helix 6	AA6	B	86	104	Right-handed alpha
Helix 7	AA7	B	108	129	Right-handed alpha
Helix 8	AA8	B	133	147	Right-handed alpha
Helix 9	AA9	B	149	167	Right-handed alpha
Helix 10	AB1	B	186	193	Right-handed alpha
Helix 11	AB2	B	193	212	Right-handed alpha
Helix 12	AB3	B	216	235	Right-handed alpha
Helix 13	AB4	B	262	270	Right-handed alpha
Helix 14	AB5	B	271	285	Right-handed alpha
Helix 15	AB6	B	286	289	Right-handed 310
Helix 16	AB7	B	290	304	Right-handed alpha
Helix 17	AB8	B	313	333	Right-handed alpha
Helix 18	AB9	B	340	355	Right-handed alpha
Helix 19	AC1	B	356	361	Right-handed alpha
Helix 20	AC2	B	364	393	Right-handed alpha
Helix 21	AC3	B	398	415	Right-handed alpha
Helix 22	AC4	B	425	440	Right-handed alpha
Helix 23	AC5	B	469	474	Right-handed alpha
Helix 24	AC6	B	474	488	Right-handed alpha
Helix 25	AC7	B	488	514	Right-handed alpha
Helix 26	AC8	B	529	551	Right-handed alpha
Helix 27	AC9	B	562	572	Right-handed alpha
Helix 28	AD1	B	573	576	Right-handed 310
Helix 29	AD2	B	577	587	Right-handed alpha
Helix 30	AD3	B	597	601	Right-handed 310
Helix 31	AD4	B	602	624	Right-handed alpha
Helix 32	AD5	B	625	630	Right-handed 310
Helix 33	AD6	B	631	647	Right-handed alpha
Helix 34	AD7	B	653	657	Right-handed 310
Helix 35	AD8	B	661	669	Right-handed alpha
Helix 36	AD9	B	672	693	Right-handed alpha
Helix 37	AE1	B	696	712	Right-handed alpha
Helix 38	AE2	B	713	721	Right-handed alpha
Helix 39	AE3	B	723	735	Right-handed alpha
Helix 40	AE4	B	737	742	Right-handed alpha
Helix 41	AE5	B	744	759	Right-handed alpha
Helix 42	AE6	B	764	776	Right-handed alpha
Helix 43	AE7	B	776	787	Right-handed alpha
Helix 44	AE8	B	793	797	Right-handed 310
Helix 45	AE9	B	798	818	Right-handed alpha
Helix 46	AF1	B	826	845	Right-handed alpha
Helix 47	AF2	B	848	867	Right-handed alpha
Helix 48	AF3	B	871	894	Right-handed alpha
Helix 49	AF4	B	902	924	Right-handed alpha
Helix 50	AF5	B	952	963	Right-handed alpha
Helix 51	AF6	B	964	966	Right-handed 310
Helix 52	AF7	B	969	972	Right-handed 310
Helix 53	AF8	B	973	990	Right-handed alpha
Helix 54	AF9	B	999	1016	Right-handed alpha
Helix 55	AG1	B	1018	1030	Right-handed alpha
Helix 56	AG2	B	1031	1033	Right-handed 310
Helix 57	AG3	B	1047	1062	Right-handed alpha
Helix 58	AG4	B	1071	1085	Right-handed alpha
Helix 59	AG5	B	1085	1099	Right-handed alpha
Helix 60	AG6	B	1102	1121	Right-handed alpha
Helix 61	AG7	B	1127	1145	Right-handed alpha
Helix 62	AG8	C	22	32	Right-handed alpha
Helix 63	AG9	C	75	81	Right-handed 310
Helix 64	AH1	C	94	100	Right-handed alpha
Helix 65	AH2	C	100	112	Right-handed alpha
Helix 66	AH3	C	132	136	Right-handed 310
Helix 67	AH4	C	157	170	Right-handed alpha
Helix 68	AH5	F	23	25	Right-handed 310
Helix 69	AH6	F	117	129	Right-handed alpha
Helix 70	AH7	A	10	23	Right-handed alpha
Helix 71	AH8	A	25	28	Right-handed 310
Helix 72	AH9	A	29	46	Right-handed alpha
Helix 73	AI1	A	50	61	Right-handed alpha
Helix 74	AI2	A	63	81	Right-handed alpha
Helix 75	AI3	A	86	104	Right-handed alpha
Helix 76	AI4	A	108	129	Right-handed alpha
Helix 77	AI5	A	136	147	Right-handed alpha
Helix 78	AI6	A	149	168	Right-handed alpha
Helix 79	AI7	A	184	193	Right-handed alpha
Helix 80	AI8	A	193	212	Right-handed alpha
Helix 81	AI9	A	216	235	Right-handed alpha
Helix 82	AJ1	A	262	270	Right-handed alpha
Helix 83	AJ2	A	271	285	Right-handed alpha
Helix 84	AJ3	A	286	289	Right-handed 310
Helix 85	AJ4	A	290	304	Right-handed alpha
Helix 86	AJ5	A	305	310	Right-handed 310
Helix 87	AJ6	A	313	333	Right-handed alpha
Helix 88	AJ7	A	340	355	Right-handed alpha
Helix 89	AJ8	A	356	361	Right-handed alpha
Helix 90	AJ9	A	364	393	Right-handed alpha
Helix 91	AK1	A	398	415	Right-handed alpha
Helix 92	AK2	A	425	440	Right-handed alpha
Helix 93	AK3	A	469	474	Right-handed alpha
Helix 94	AK4	A	474	488	Right-handed alpha
Helix 95	AK5	A	488	506	Right-handed alpha
Helix 96	AK6	A	532	551	Right-handed alpha
Helix 97	AK7	A	562	571	Right-handed alpha
Helix 98	AK8	A	572	576	Right-handed 310
Helix 99	AK9	A	577	587	Right-handed alpha
Helix 100	AL1	A	597	601	Right-handed 310
Helix 101	AL2	A	602	624	Right-handed alpha
Helix 102	AL3	A	626	630	Right-handed 310
Helix 103	AL4	A	631	649	Right-handed alpha
Helix 104	AL5	A	653	657	Right-handed 310
Helix 105	AL6	A	661	667	Right-handed alpha
Helix 106	AL7	A	672	693	Right-handed alpha
Helix 107	AL8	A	696	712	Right-handed alpha
Helix 108	AL9	A	713	721	Right-handed alpha
Helix 109	AM1	A	724	735	Right-handed alpha
Helix 110	AM2	A	738	743	Right-handed 310
Helix 111	AM3	A	744	759	Right-handed alpha
Helix 112	AM4	A	775	787	Right-handed alpha
Helix 113	AM5	A	793	797	Right-handed 310
Helix 114	AM6	A	798	818	Right-handed alpha
Helix 115	AM7	A	826	845	Right-handed alpha
Helix 116	AM8	A	848	867	Right-handed alpha
Helix 117	AM9	A	871	894	Right-handed alpha
Helix 118	AN1	A	902	922	Right-handed alpha
Helix 119	AN2	A	953	963	Right-handed alpha
Helix 120	AN3	A	964	966	Right-handed 310
Helix 121	AN4	A	969	972	Right-handed 310
Helix 122	AN5	A	973	990	Right-handed alpha
Helix 123	AN6	A	1003	1016	Right-handed alpha
Helix 124	AN7	A	1018	1030	Right-handed alpha
Helix 125	AN8	A	1048	1061	Right-handed alpha
Helix 126	AN9	A	1072	1083	Right-handed alpha
Helix 127	AO1	A	1087	1098	Right-handed alpha
Helix 128	AO2	A	1102	1118	Right-handed alpha
Helix 129	AO3	A	1131	1145	Right-handed alpha
Helix 130	AO4	D	22	32	Right-handed alpha
Helix 131	AO5	D	75	81	Right-handed 310
Helix 132	AO6	D	94	100	Right-handed alpha
Helix 133	AO7	D	100	112	Right-handed alpha
Helix 134	AO8	D	132	136	Right-handed 310
Helix 135	AO9	D	158	170	Right-handed alpha
Helix 136	AP1	E	23	25	Right-handed 310
Helix 137	AP2	E	117	129	Right-handed alpha

There are 10 sheets in PDB entry 5DLQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	464	first strand
Strand 2	F	36	47	anti-parallel
Strand 3	F	30	33	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	464	first strand
Strand 2	F	36	47	anti-parallel
Strand 3	F	54	62	anti-parallel
Strand 4	F	68	74	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	896	898	first strand
Strand 2	F	144	151	anti-parallel
Strand 3	F	133	139	anti-parallel
Strand 4	F	85	95	anti-parallel
Strand 5	F	98	102	anti-parallel
Strand 6	F	108	109	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	54	first strand
Strand 2	C	57	66	anti-parallel
Strand 3	C	10	17	parallel
Strand 4	C	85	91	parallel
Strand 5	C	117	122	parallel
Strand 6	C	144	148	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	21	first strand
Strand 2	F	78	82	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	464	first strand
Strand 2	E	36	47	anti-parallel
Strand 3	E	30	33	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	464	first strand
Strand 2	E	36	47	anti-parallel
Strand 3	E	54	62	anti-parallel
Strand 4	E	68	74	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	897	898	first strand
Strand 2	E	144	151	anti-parallel
Strand 3	E	133	139	anti-parallel
Strand 4	E	85	94	anti-parallel
Strand 5	E	99	102	anti-parallel
Strand 6	E	108	109	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	54	first strand
Strand 2	D	57	66	anti-parallel
Strand 3	D	10	17	parallel
Strand 4	D	85	91	parallel
Strand 5	D	117	122	parallel
Strand 6	D	144	148	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	21	first strand
Strand 2	E	78	82	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DLQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DLQ